Stard3nl (STARD3 N-terminal like) - Rat Genome Database

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Gene: Stard3nl (STARD3 N-terminal like) Heterocephalus glaber
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Symbol: Stard3nl
Name: STARD3 N-terminal like
RGD ID: 18928175
Description: ENCODES a protein that exhibits protein homodimerization activity (ortholog); INVOLVED IN cholesterol transport (inferred); vesicle tethering to endoplasmic reticulum (inferred); FOUND IN endosome (ortholog); organelle membrane contact site (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: MLN64 N-terminal domain homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474023,063,504 - 23,099,087 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474023,063,906 - 23,098,411 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Stard3nl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474023,063,504 - 23,099,087 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474023,063,906 - 23,098,411 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
STARD3NL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38738,178,245 - 38,230,669 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl738,178,245 - 38,230,671 (+)Ensemblhg38GRCh38
GRCh37738,217,847 - 38,270,270 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36738,184,458 - 38,236,795 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34737,991,172 - 38,043,509NCBI
Celera738,202,354 - 38,254,700 (+)NCBICelera
Cytogenetic Map7p14.1NCBI
HuRef738,098,656 - 38,151,174 (+)NCBIHuRef
CHM1_1738,217,726 - 38,270,163 (+)NCBICHM1_1
T2T-CHM13v2.0738,319,177 - 38,371,581 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2738,255,486 - 38,307,952 (+)NCBI
Stard3nl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391319,541,846 - 19,579,983 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1319,541,846 - 19,579,965 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381319,357,676 - 19,395,813 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1319,357,676 - 19,395,795 (-)Ensemblmm10GRCm38
MGSCv371319,449,545 - 19,487,621 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361319,365,141 - 19,403,217 (-)NCBIMGSCv36mm8
Celera1319,660,880 - 19,698,789 (-)NCBICelera
Cytogenetic Map13A2NCBI
cM Map136.89NCBI
Stard3nl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81750,278,859 - 50,312,864 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1750,278,894 - 50,312,866 (+)EnsemblGRCr8
mRatBN7.21745,583,278 - 45,617,226 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1745,583,266 - 45,617,226 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1747,655,768 - 47,689,740 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01752,414,916 - 52,448,894 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01746,905,109 - 46,939,250 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01747,662,553 - 47,696,453 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1747,662,532 - 47,696,444 (+)Ensemblrn6Rnor6.0
Rnor_5.01755,791,548 - 55,825,467 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41753,402,078 - 53,436,085 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1750,916,749 - 50,950,697 (-)NCBICelera
RGSC_v3.11753,404,918 - 53,438,922 (+)NCBI
Cytogenetic Map17q11NCBI
Stard3nl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554605,364,552 - 5,423,381 (-)Ensembl
ChiLan1.0NW_0049554605,364,546 - 5,423,330 (-)NCBIChiLan1.0ChiLan1.0
STARD3NL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2643,006,418 - 43,058,868 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1791,331,146 - 91,383,603 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0738,811,588 - 38,864,042 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1739,032,317 - 39,084,789 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl739,032,337 - 39,084,789 (+)EnsemblpanPan2panpan1.1
STARD3NL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11811,732,949 - 11,784,241 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1811,733,368 - 11,784,248 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1811,374,886 - 11,426,155 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01812,001,590 - 12,052,988 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1812,001,856 - 12,052,993 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11811,812,882 - 11,870,386 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01811,735,126 - 11,790,958 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01811,966,769 - 12,018,062 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Stard3nl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511894,278,020 - 94,325,639 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647813,489,691 - 13,537,579 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647813,489,743 - 13,537,225 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STARD3NL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9108,631,256 - 108,676,183 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.19108,631,239 - 108,675,617 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29119,542,645 - 119,577,352 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STARD3NL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12120,276,861 - 20,329,340 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2120,278,679 - 20,329,295 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660622,014,032 - 2,066,530 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Stard3nl
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11438,082,140 - 38,116,078 (-)NCBIRrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000012626   ⟹   ENSHGLP00000012490
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474023,063,504 - 23,099,087 (-)Ensembl
RefSeq Acc Id: XM_004840275   ⟹   XP_004840332
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474023,063,906 - 23,098,408 (-)NCBI
RefSeq Acc Id: XM_013070557   ⟹   XP_012926011
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474023,063,906 - 23,092,830 (-)NCBI
RefSeq Acc Id: XM_013070558   ⟹   XP_012926012
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474023,063,906 - 23,098,359 (-)NCBI
RefSeq Acc Id: XM_021254563   ⟹   XP_021110222
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474023,063,906 - 23,098,409 (-)NCBI
RefSeq Acc Id: XR_002393300
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474023,063,906 - 23,098,410 (-)NCBI
RefSeq Acc Id: XR_002393301
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474023,065,115 - 23,098,411 (-)NCBI
RefSeq Acc Id: XR_002393302
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474023,063,906 - 23,098,411 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004840332 (Get FASTA)   NCBI Sequence Viewer  
  XP_012926011 (Get FASTA)   NCBI Sequence Viewer  
  XP_012926012 (Get FASTA)   NCBI Sequence Viewer  
  XP_021110222 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000012490
GenBank Protein JAO01418 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021110222   ⟸   XM_021254563
- UniProtKB: A0A0P6JIY6 (UniProtKB/TrEMBL),   G5B3V3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004840332   ⟸   XM_004840275
- UniProtKB: A0A0P6JIY6 (UniProtKB/TrEMBL),   G5B3V3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012926012   ⟸   XM_013070558
- UniProtKB: A0A0P6JIY6 (UniProtKB/TrEMBL),   G5B3V3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012926011   ⟸   XM_013070557
- UniProtKB: A0A0P6JIY6 (UniProtKB/TrEMBL),   G5B3V3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000012490   ⟸   ENSHGLT00000012626


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000008923 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000012626 ENTREZGENE
InterPro MENTAL UniProtKB/TrEMBL
  STARD3 UniProtKB/TrEMBL
KEGG Report hgl:101712441 UniProtKB/TrEMBL
NCBI Gene Stard3nl ENTREZGENE
PANTHER STARD3 N-TERMINAL-LIKE PROTEIN UniProtKB/TrEMBL
  STEROIDOGENIC ACUTE REGULATORY PROTEIN-LIKE UniProtKB/TrEMBL
Pfam MENTAL UniProtKB/TrEMBL
PROSITE MENTAL UniProtKB/TrEMBL
UniProt A0A0P6JIY6 ENTREZGENE, UniProtKB/TrEMBL
  G5B3V3 ENTREZGENE, UniProtKB/TrEMBL