Cmtm4 (CKLF like MARVEL transmembrane domain containing 4) - Rat Genome Database

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Gene: Cmtm4 (CKLF like MARVEL transmembrane domain containing 4) Heterocephalus glaber
Analyze
Symbol: Cmtm4
Name: CKLF like MARVEL transmembrane domain containing 4
RGD ID: 18924488
Description: INVOLVED IN immune response (ortholog); intracellular protein localization (ortholog); leukocyte migration involved in inflammatory response (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CKLF-like MARVEL transmembrane domain-containing protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474619,768,943 - 19,824,173 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474619,769,097 - 19,830,224 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Cmtm4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474619,768,943 - 19,824,173 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474619,769,097 - 19,830,224 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
CMTM4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381666,598,178 - 66,696,743 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1666,614,750 - 66,696,743 (-)Ensemblhg38GRCh38
GRCh371666,648,653 - 66,730,646 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361665,206,154 - 65,288,111 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341665,213,160 - 65,288,111NCBI
Celera1651,155,146 - 51,176,975 (-)NCBICelera
Cytogenetic Map16q21-q22.1NCBI
HuRef1652,524,423 - 52,605,791 (-)NCBIHuRef
CHM1_11668,055,796 - 68,137,675 (-)NCBICHM1_1
T2T-CHM13v2.01672,359,915 - 72,491,037 (-)NCBIT2T-CHM13v2.0
Cmtm4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398105,074,823 - 105,122,439 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8105,074,823 - 105,122,439 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm388104,348,191 - 104,395,807 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8104,348,191 - 104,395,807 (-)Ensemblmm10GRCm38
MGSCv378106,878,416 - 106,919,596 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv368107,243,645 - 107,284,825 (-)NCBIMGSCv36mm8
Celera8108,585,611 - 108,626,807 (-)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.04NCBI
Cmtm4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr819582,642 - 622,546 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl19582,621 - 677,816 (+)EnsemblGRCr8
mRatBN7.219576,203 - 616,109 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl19576,203 - 616,109 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx19572,067 - 611,907 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0191,338,864 - 1,378,708 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.019614,078 - 653,922 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd19589,348 - 629,261 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive194,397,369 - 4,437,282 (+)NCBILyon_Normotensive
Lyon_Hypertensive194,890,188 - 4,930,100 (+)NCBILyon_Hypertensive
F344_StmMcwi19437,839 - 477,678 (+)NCBIF344_StmMcwi
Rnor_6.019784,618 - 824,420 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl19784,618 - 824,420 (+)Ensemblrn6Rnor6.0
Rnor_5.019783,437 - 822,756 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.419532,342 - 572,975 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera19572,245 - 612,048 (+)NCBICelera
Cytogenetic Map19p14NCBI
Cmtm4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543323,189,925 - 23,245,728 (-)Ensembl
ChiLan1.0NW_00495543323,189,925 - 23,245,722 (-)NCBIChiLan1.0ChiLan1.0
CMTM4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21876,082,700 - 76,199,500 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11681,995,126 - 82,111,888 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01646,898,177 - 47,014,892 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11666,032,392 - 66,116,527 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1666,034,896 - 66,116,531 (-)EnsemblpanPan2panpan1.1
CMTM4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1582,643,032 - 82,660,415 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl582,643,088 - 82,653,344 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha582,576,922 - 82,648,859 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0583,025,138 - 83,097,169 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl583,024,879 - 83,092,088 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1582,848,259 - 82,920,186 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0582,535,108 - 82,607,227 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0583,173,695 - 83,245,701 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cmtm4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934942,627,114 - 42,653,071 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647516,943,340 - 16,950,999 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647516,936,003 - 16,952,418 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CMTM4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl627,320,364 - 27,391,471 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1627,319,074 - 27,391,478 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CMTM4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1552,313,253 - 52,393,715 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl552,320,532 - 52,393,532 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604723,517,911 - 23,601,301 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cmtm4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11712,636,343 - 12,680,309 (-)NCBIRrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000015504   ⟹   ENSHGLP00000015345
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474619,768,943 - 19,824,173 (+)Ensembl
RefSeq Acc Id: XM_004843102   ⟹   XP_004843159
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474619,769,097 - 19,830,224 (+)NCBI
RefSeq Acc Id: XR_002394343
Type: NON-CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474619,769,097 - 19,830,224 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004843159 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000015345
RefSeq Acc Id: XP_004843159   ⟸   XM_004843102
- UniProtKB: A0AAX6P4B4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000015345   ⟸   ENSHGLT00000015504


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000010963 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000015504 ENTREZGENE
InterPro Marvel UniProtKB/TrEMBL
  MARVEL-CKLF_proteins UniProtKB/TrEMBL
KEGG Report hgl:101703104 UniProtKB/TrEMBL
NCBI Gene Cmtm4 ENTREZGENE
PANTHER CKLF-LIKE MARVEL TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN 4 UniProtKB/TrEMBL
  MARVEL-CONTAINING POTENTIAL LIPID RAFT-ASSOCIATED PROTEIN UniProtKB/TrEMBL
Pfam MARVEL UniProtKB/TrEMBL
PROSITE MARVEL UniProtKB/TrEMBL
UniProt A0AAX6P4B4 ENTREZGENE, UniProtKB/TrEMBL