Pskh1 (protein serine kinase H1) - Rat Genome Database

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Gene: Pskh1 (protein serine kinase H1) Heterocephalus glaber
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Symbol: Pskh1
Name: protein serine kinase H1
RGD ID: 18901104
Description: ENCODES a protein that exhibits ATP binding (inferred); kinase activity (inferred); nucleotide binding (inferred); INVOLVED IN determination of left/right symmetry (ortholog); heart development (ortholog); protein phosphorylation (ortholog); ASSOCIATED WITH Progressive Familial Intrahepatic Cholestasis 13 (ortholog); FOUND IN centrosome (inferred); cytosol (inferred); endoplasmic reticulum membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: serine/threonine-protein kinase H1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474618,450,195 - 18,468,080 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474618,450,197 - 18,485,102 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
Pskh1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474618,450,195 - 18,468,080 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474618,450,197 - 18,485,102 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
PSKH1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381667,893,254 - 67,929,676 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1667,893,254 - 67,929,676 (+)Ensemblhg38GRCh38
GRCh371667,927,157 - 67,963,579 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361666,484,716 - 66,521,082 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341666,484,715 - 66,521,081NCBI
Celera1652,435,604 - 52,472,038 (+)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1653,800,311 - 53,837,151 (+)NCBIHuRef
CHM1_11669,335,357 - 69,371,760 (+)NCBICHM1_1
T2T-CHM13v2.01673,689,027 - 73,725,450 (+)NCBIT2T-CHM13v2.0
Pskh1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398106,627,106 - 106,658,434 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8106,627,073 - 106,658,410 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm388105,900,474 - 105,931,802 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8105,900,441 - 105,931,778 (+)Ensemblmm10GRCm38
MGSCv378108,424,374 - 108,455,702 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv368108,789,603 - 108,820,931 (+)NCBIMGSCv36mm8
Celera8110,128,235 - 110,159,850 (+)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.06NCBI
Pskh1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81950,704,780 - 50,736,890 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1950,704,781 - 50,736,892 (+)EnsemblGRCr8
mRatBN7.21933,794,919 - 33,827,040 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1933,794,935 - 33,827,032 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1940,610,462 - 40,642,576 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01941,263,777 - 41,295,891 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01943,562,099 - 43,594,336 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1944,492,073 - 44,524,187 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1942,616,916 - 42,649,029 (+)NCBILyon_Normotensive
Lyon_Hypertensive1944,490,243 - 44,522,356 (+)NCBILyon_Hypertensive
F344_StmMcwi1942,249,254 - 42,281,366 (+)NCBIF344_StmMcwi
Rnor_6.01937,873,515 - 37,905,625 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1937,873,515 - 37,905,625 (+)Ensemblrn6Rnor6.0
Rnor_5.01948,740,283 - 48,772,656 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41935,740,162 - 35,773,792 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1933,222,478 - 33,254,589 (+)NCBICelera
RGSC_v3.11935,745,055 - 35,778,671 (+)NCBI
Cytogenetic Map19q12NCBI
Pskh1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554848,784,128 - 8,814,475 (-)Ensembl
ChiLan1.0NW_0049554848,784,128 - 8,813,669 (-)NCBIChiLan1.0ChiLan1.0
PSKH1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21877,420,167 - 77,456,358 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11683,331,599 - 83,367,786 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01648,234,877 - 48,271,069 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11667,637,855 - 67,658,256 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1667,637,855 - 67,658,256 (+)EnsemblpanPan2panpan1.1
PSKH1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1581,567,665 - 81,596,382 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl581,569,624 - 81,584,477 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha581,557,650 - 81,586,326 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0582,002,991 - 82,031,730 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl582,002,990 - 82,031,694 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1581,829,200 - 81,857,930 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0581,511,330 - 81,539,994 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0582,153,549 - 82,182,229 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pskh1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934941,303,151 - 41,324,154 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647518,264,978 - 18,284,407 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647518,264,975 - 18,284,407 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PSKH1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl628,508,823 - 28,544,062 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1628,508,785 - 28,544,063 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PSKH1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1559,510,587 - 59,543,560 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl559,512,617 - 59,543,497 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604722,235,933 - 22,269,413 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pskh1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11725,641,010 - 25,670,293 (+)NCBIRrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000018852   ⟹   ENSHGLP00000018666
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474618,450,195 - 18,468,080 (-)Ensembl
RefSeq Acc Id: XM_004843001   ⟹   XP_004843058
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474618,450,197 - 18,485,102 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004843058 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000018666
GenBank Protein JAO03398 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004843058   ⟸   XM_004843001
- UniProtKB: A0A0N8EUZ1 (UniProtKB/TrEMBL),   G5C679 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000018666   ⟸   ENSHGLT00000018852


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000013365 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000018852 ENTREZGENE
Gene3D-CATH Transferase(Phosphotransferase) domain 1 UniProtKB/TrEMBL
InterPro Kinase-like_dom_sf UniProtKB/TrEMBL
  Prot_kinase_dom UniProtKB/TrEMBL
  Protein_kinase_ATP_BS UniProtKB/TrEMBL
  Ser/Thr_kinase_AS UniProtKB/TrEMBL
KEGG Report hgl:101702042 UniProtKB/TrEMBL
NCBI Gene Pskh1 ENTREZGENE
PANTHER SERINE/THREONINE-PROTEIN KINASE UniProtKB/TrEMBL
Pfam Pkinase UniProtKB/TrEMBL
PROSITE PROTEIN_KINASE_ATP UniProtKB/TrEMBL
  PROTEIN_KINASE_DOM UniProtKB/TrEMBL
  PROTEIN_KINASE_ST UniProtKB/TrEMBL
SMART S_TKc UniProtKB/TrEMBL
Superfamily-SCOP SSF56112 UniProtKB/TrEMBL
UniProt A0A0N8EUZ1 ENTREZGENE, UniProtKB/TrEMBL
  G5C679 ENTREZGENE, UniProtKB/TrEMBL