EIF4ENIF1 (eukaryotic translation initiation factor 4E nuclear import factor 1) - Rat Genome Database

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Pathways
Gene: EIF4ENIF1 (eukaryotic translation initiation factor 4E nuclear import factor 1) Chlorocebus sabaeus
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Symbol: EIF4ENIF1
Name: eukaryotic translation initiation factor 4E nuclear import factor 1
RGD ID: 18482570
Description: ENCODES a protein that exhibits kinase binding (inferred); mRNA binding (inferred); nuclear export signal receptor activity (inferred); INVOLVED IN miRNA-mediated gene silencing by inhibition of translation (ortholog); negative regulation of neuron differentiation (ortholog); negative regulation of translation (ortholog); FOUND IN cytoplasm (inferred); cytoplasmic ribonucleoprotein granule (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: eukaryotic translation initiation factor 4E transporter
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11914,326,516 - 14,389,340 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1914,327,033 - 14,380,727 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666045111,730,664 - 111,786,543 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse:




References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
EIF4ENIF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11914,326,516 - 14,389,340 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1914,327,033 - 14,380,727 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666045111,730,664 - 111,786,543 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
EIF4ENIF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382231,436,963 - 31,493,568 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2231,436,977 - 31,497,047 (-)Ensemblhg38GRCh38
GRCh372231,835,353 - 31,885,828 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362230,165,355 - 30,215,704 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342230,159,908 - 30,210,258NCBI
Celera2215,635,833 - 15,686,382 (-)NCBICelera
Cytogenetic Map22q12.2NCBI
HuRef2214,796,261 - 14,846,685 (-)NCBIHuRef
CHM1_12231,795,158 - 31,845,693 (-)NCBICHM1_1
T2T-CHM13v2.02231,899,248 - 31,958,783 (-)NCBIT2T-CHM13v2.0
Eif4enif1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39113,152,344 - 3,194,588 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl113,152,392 - 3,194,588 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38113,202,343 - 3,244,588 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl113,202,392 - 3,244,588 (+)Ensemblmm10GRCm38
MGSCv37113,102,356 - 3,144,591 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36113,102,765 - 3,144,584 (+)NCBIMGSCv36mm8
Celera113,693,497 - 3,735,839 (+)NCBICelera
Cytogenetic Map11A1NCBI
cM Map112.24NCBI
Eif4enif1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81482,280,566 - 82,328,559 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1482,280,748 - 82,323,242 (+)EnsemblGRCr8
mRatBN7.21478,056,115 - 78,099,846 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1478,056,297 - 78,098,793 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1482,498,084 - 82,540,572 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01483,738,193 - 83,780,680 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01480,183,927 - 80,226,418 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01483,412,843 - 83,455,694 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1483,412,968 - 83,455,456 (+)Ensemblrn6Rnor6.0
Rnor_5.01484,100,655 - 84,143,204 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41483,808,322 - 83,850,810 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1476,971,515 - 77,013,980 (+)NCBICelera
Cytogenetic Map14q21NCBI
Eif4enif1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554555,611,093 - 5,660,104 (-)Ensembl
ChiLan1.0NW_0049554555,612,087 - 5,660,543 (-)NCBIChiLan1.0ChiLan1.0
EIF4ENIF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22341,393,778 - 41,446,133 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12244,094,264 - 44,146,346 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02212,463,859 - 12,515,953 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12230,322,498 - 30,378,322 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2230,322,502 - 30,378,322 (-)EnsemblpanPan2panpan1.1
EIF4ENIF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12624,355,326 - 24,403,306 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2624,355,826 - 24,402,827 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2624,224,212 - 24,272,208 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02624,738,526 - 24,786,820 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2624,738,534 - 24,786,805 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12624,440,908 - 24,489,186 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02624,702,864 - 24,751,166 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02624,764,455 - 24,812,759 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Eif4enif1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118117,327,674 - 117,377,697 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936755586,893 - 634,559 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936755586,366 - 635,294 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EIF4ENIF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1448,156,727 - 48,204,926 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11448,156,835 - 48,204,701 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21451,318,067 - 51,349,107 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Eif4enif1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247477,899,439 - 7,949,930 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247477,899,128 - 7,949,911 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Eif4enif1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11172,180,647 - 72,220,562 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in EIF4ENIF1
1418 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000006754   ⟹   ENSCSAP00000004951
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1914,327,033 - 14,380,727 (-)Ensembl
RefSeq Acc Id: XM_007975508   ⟹   XP_007973699
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11914,326,516 - 14,381,803 (-)NCBI
Vero_WHO_p1.0NW_023666045111,730,745 - 111,786,543 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007975509   ⟹   XP_007973700
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11914,326,516 - 14,381,652 (-)NCBI
Vero_WHO_p1.0NW_023666045111,731,090 - 111,786,536 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007975510   ⟹   XP_007973701
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11914,326,516 - 14,381,326 (-)NCBI
Vero_WHO_p1.0NW_023666045111,731,234 - 111,786,536 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007975511   ⟹   XP_007973702
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11914,326,516 - 14,383,128 (-)NCBI
Vero_WHO_p1.0NW_023666045111,730,664 - 111,786,536 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007975512   ⟹   XP_007973703
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11914,326,516 - 14,381,866 (-)NCBI
Vero_WHO_p1.0NW_023666045111,730,745 - 111,786,532 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007975513   ⟹   XP_007973704
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11914,326,516 - 14,381,652 (-)NCBI
Vero_WHO_p1.0NW_023666045111,731,070 - 111,786,536 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038007587   ⟹   XP_037863515
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666045111,730,745 - 111,786,532 (+)NCBI
RefSeq Acc Id: XM_038007588   ⟹   XP_037863516
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_023666045111,730,745 - 111,786,532 (+)NCBI
RefSeq Acc Id: XP_007973702   ⟸   XM_007975511
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007973703   ⟸   XM_007975512
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R8L2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007973699   ⟸   XM_007975508
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007973704   ⟸   XM_007975513
- Peptide Label: isoform X2
- UniProtKB: A0A0D9R8L2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_007973700   ⟸   XM_007975509
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007973701   ⟸   XM_007975510
- Peptide Label: isoform X1
Ensembl Acc Id: ENSCSAP00000004951   ⟸   ENSCSAT00000006754
RefSeq Acc Id: XP_037863515   ⟸   XM_038007587
- Peptide Label: isoform X3
RefSeq Acc Id: XP_037863516   ⟸   XM_038007588
- Peptide Label: isoform X4


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008717 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006754.1 UniProtKB/TrEMBL
InterPro eIF4E-T UniProtKB/TrEMBL
NCBI Gene EIF4ENIF1 ENTREZGENE
PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E TRANSPORTER UniProtKB/TrEMBL
  PTHR12269 UniProtKB/TrEMBL
Pfam EIF4E-T UniProtKB/TrEMBL
UniProt A0A0D9R8L2 ENTREZGENE, UniProtKB/TrEMBL