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Gene: CHI3L2 (chitinase 3 like 2) Chlorocebus sabaeus

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Symbol:

CHI3L2

Name:

chitinase 3 like 2

RGD ID:

18467180

Description:

ENCODES a protein that exhibits chitinase activity (ortholog); INVOLVED IN carbohydrate metabolic process (inferred); chitin catabolic process (inferred); FOUND IN extracellular region (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

chitinase-3-like protein 2

RGD Orthologs

Human

Bonobo

Pig

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	22,336,625 - 22,357,716 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	22,334,268 - 22,356,924 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	36,125,238 - 36,140,672 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

carbohydrate metabolic process (IEA)

chitin catabolic process (IEA)

Cellular Component

extracellular region (IEA)

Molecular Function

chitin binding (IEA)

chitinase activity (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

CHI3L2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	22,336,625 - 22,357,716 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	22,334,268 - 22,356,924 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	36,125,238 - 36,140,672 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CHI3L2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	111,227,659 - 111,243,440 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	111,200,771 - 111,243,440 (+)	Ensembl			hg38	GRCh38
GRCh37	1	111,770,281 - 111,786,062 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	111,571,804 - 111,587,585 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	1	111,482,373 - 111,498,103	NCBI
Celera	1	110,017,275 - 110,033,061 (+)	NCBI		Celera
Cytogenetic Map	1	p13.2	NCBI
HuRef	1	109,641,843 - 109,657,635 (+)	NCBI		HuRef
CHM1_1	1	111,885,420 - 111,901,199 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	111,241,751 - 111,258,269 (+)	NCBI		T2T-CHM13v2.0

CHI3L2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	115,801,155 - 115,816,011 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	114,950,009 - 114,964,865 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	113,873,238 - 113,887,998 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	126,459,243 - 126,473,998 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	126,459,243 - 126,473,998 (-)	Ensembl			panPan2	panpan1.1

CHI3L2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	109,081,450 - 109,099,098 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	109,081,543 - 109,099,172 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	119,457,101 - 119,481,082 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Variants

Variants in CHI3L2
451 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

ectoderm	endocrine system	hemolymphoid system	mesenchyme	mesoderm	nervous system	reproductive system
40	31	20	31	31	29	20

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007977594	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JBLKOC010000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCSAT00000016959 ⟹ ENSCSAP00000016454

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	20	22,334,268 - 22,356,924 (-)	Ensembl

RefSeq Acc Id:

XM_007977594 ⟹ XP_007975785

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	20	22,336,625 - 22,357,716 (-)	NCBI
Vero_WHO_p1.0	NW_023666038	36,125,238 - 36,140,672 (+)	NCBI

Sequence:

show sequence

ATCCACCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCATGCGGCCAAC
CTCCCTTCTTTATCAATGTGACAGAAAGTTGAAATGAAGATGAATTACTGGGACATGAGATCAG
ATCATGTTTATTGAGTGTACACTCCGAGTCAGGTACTATGCTAAGTGCTTCACTTGCATTATCA
CATTTCATTCCCTCAAACAACCTCCCAGGGAGGTAATCTCATTATCCCCATTTTATAAAGCCCT
TTGCCTCTGTCTTATGAGAGTTGGGGCAGGCCTGAGGGTAATGAGTGATGATCTCAGATGCCCT
CCAGGGTCCTGGCCTGTCTTCTACAGCAGGAATCCCTGTGAGCAGCTTCATTCTCATTGCTGGC
TCCTGCTTATCTCCTCTTTTTCCTCCTTCCTCCTCCAGTCCTCAGTTCTGCAGATCTGGTAGCA
CCTGCTCAGATCCCACCAGCACATCAGAGGCACTTACAATGCCCATCCCCCACCCTCAAAAATA
GGAAGAGGAGAAACTCTCAGACCACATCCTGCATTCGAGCAAAGTTCCCACCAGTGGTTCAATT
CAGGCAAACATTTATGCGACATCTTCCAGCTCATAGCTAACCTAGCAACCACCAAAGCTGGGCT
CCCAAGAGGTCATTCATTCACTCATCAGCAATGGACTACCAGTGATGGACCTGCTATGTGGGGG
GGTGGAAACTGGAAGTGTACAGATGAATGATTCATTCATTTATTCTTACACTTTTTCACCTAAC
AGTGACTTACTGAGGTCTTATTTTGTTTGAAGCACAGGTCCTAAAGATGTGGTGGGTAGCGAGA
AAGAGTCTTGATCTCATGTTCCACTTAGTGGAAGAAATAGGACTTACAGTCCATTATCAAACAA
CTTCGTAACAGTCCAGTCATACGCACACAAAGTCCAGAAGAATGGGCAAGAGATTTGTAGTTTG
GGATGATGGATCATAACATCTCACACATAATGGGTCTCAGACAAGGTCAGAGTTGGCATTGCTC
AAATCTGGGCTTCGTTTCCGAGAAGTTTCACAAGTCTGCCAGGGGAAGTCCCTGGACTTCTTGC
TGCTTTCGTGTAGGGCAGGCTGTCGAAACCTCAGTGGATAAAAGACCTAGAAAATGCGCATCCC
AGAAGAAGCTGGTCGAGGATATGGGAGCAACCACCATGGAACAGAAGTCTCTCTGGCCAGGTGT
AATGGTCTTGCTGCTTCTCCAGGGAGGATCTGCCTACAAACTGGTTTGTTACTTTACCAACTGG
TCCCAGGACCGGCAGGAACCAGGAAAATTCACCCCTGAGAATGTTGACCCCTTCCTATGCTCTC
ACCTCATCTACTCATTCGCCAGCATCGAGAACAACAAGGTTATCATCAAGGACAAGAGTGAAGT
GATGCTCTACCAGACCATCAACAGTCTCAAAACCAAGAATCCCAAACTCAAAATTCTCTTGTCC
ATTGGAGGATACCTGTTTGGTTCCAAAGGGTTCCACCCCATGGTGGATTCTTCTACATCACGCT
TGGAATTCGTTAACTCTGTAATCCTGTTTCTGAGGAACCATAACTTTGATGGACTGGATGTAAG
CTGGATCTACCCAGATCAGAAAGAAAACACTCATTTCACTCTGCTGATTCATGAGTTAGCAGAA
GCCTTTCAGAAGGACTTCACAACATCCACCAAGGAAAGGCTTCTCTTGACTGCAGGTGTATCTG
CTGGGAGGCAGATGATTGATAACAGCTATCAAGTTGAGAAACTGGCAAAAGATCTGGATTTCAT
CAACCTCCTGTCCTTTGACTTCCATGGGTCTTGGGAAAAGCCCCTTATCACTGGCCACAACAGC
CCTCTGAGCAAGGGGTGGCAGGACAGAGGGCCAAGCTCCTACTACAATGTGGAATATGCTGTGG
GGTACTGGATACACAAGGGAATGCCCTCAGAGAAGGTGGTCATGGGCATCCCCACATATGGGCA
CTCCTTCACACTGGCCTCTGCAGAAACCACCGTGGGGGCCCCTGCCTCTGGCCCTGGAGCTGCT
GGACCCATCACAGAGTCTTCAGGCTTCCTGGCCTATTATGAGATCTGCCAGTTTCTGAAAGGAG
CCAAGATCACAAGGCTCCAGGATCAGCAAGTTCCCTACACAGTCAAGGGGAACCAGTGGGTGGG
CTATGACGATGTGGAGAGTATGGAGACCAAGGTTCGGTTCTTAAAGAATTTAAACCTGGGAGGA
GCCATGATCTGGTCTATTGACATGGATGACTTCACTGGCAAATCCTGCAACCAGGGCCCTTACC
CTCTTGTCCAAGCAGTCAAGAGAAACCTTGGCTCCCTGTGAAGGATTAATTTACAGAGAAACAA
GCAAGGTGATCTTGCTGCCTGGGGCCTGCTCTCTCCCAGGAATTCTAATGTGGGATTCCCCTTG
CCAGGTTGGCCTTTGGATCTCTCTTCCAAGCCTTTCCTCACTTCCTCTTAAATCATGGATTGGA
CCTGGTTTTGTTTTCCTGCAGCTGTTGACTTGTTGCCCTGAAGTACAATTAAAAAAAAATTCAT
TTTGCTCCAGTAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_007975785	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000016454.1

RefSeq Acc Id:	XP_007975785 ⟸ XM_007977594
- UniProtKB:	A0A0D9S6G5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCSAP00000016454 ⟸ ENSCSAT00000016959

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000001572	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000016959.1	UniProtKB/TrEMBL
Gene3D-CATH	3.10.50.10	UniProtKB/TrEMBL
	Glycosidases	UniProtKB/TrEMBL
InterPro	Chitinase_II	UniProtKB/TrEMBL
	Chitinase_insertion_sf	UniProtKB/TrEMBL
	Glyco_hydro18_cat	UniProtKB/TrEMBL
	Glycoside_hydrolase_SF	UniProtKB/TrEMBL
	Glycosyl_Hydrlase_18	UniProtKB/TrEMBL
NCBI Gene	CHI3L2	ENTREZGENE
PANTHER	CHITINASE	UniProtKB/TrEMBL
	PTHR11177:SF82	UniProtKB/TrEMBL
Pfam	Glyco_hydro_18	UniProtKB/TrEMBL
PROSITE	GH18_2	UniProtKB/TrEMBL
SMART	Glyco_18	UniProtKB/TrEMBL
Superfamily-SCOP	SSF51445	UniProtKB/TrEMBL
	SSF54556	UniProtKB/TrEMBL
UniProt	A0A0D9S6G5	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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