BAHCC1 (BAH domain and coiled-coil containing 1) - Rat Genome Database

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Gene: BAHCC1 (BAH domain and coiled-coil containing 1) Chlorocebus sabaeus
Analyze
Symbol: BAHCC1
Name: BAH domain and coiled-coil containing 1
RGD ID: 18375099
Description: ENCODES a protein that exhibits chromatin binding (inferred); INVOLVED IN chromatin organization (ortholog); locomotory behavior (ortholog); neuron differentiation (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: BAH and coiled-coil domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11673,345,746 - 73,408,585 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1673,345,772 - 73,411,066 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607744,718,859 - 44,789,332 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
BAHCC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11673,345,746 - 73,408,585 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1673,345,772 - 73,411,066 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607744,718,859 - 44,789,332 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
BAHCC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381781,395,457 - 81,466,331 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1781,395,457 - 81,466,331 (+)Ensemblhg38GRCh38
GRCh371779,369,257 - 79,433,357 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361776,987,561 - 77,047,953 (+)NCBIBuild 36Build 36hg18NCBI36
Celera1776,011,627 - 76,080,540 (+)NCBICelera
Cytogenetic Map17q25.3NCBI
HuRef1774,814,456 - 74,882,595 (+)NCBIHuRef
CHM1_11779,459,769 - 79,519,640 (+)NCBICHM1_1
T2T-CHM13v2.01782,310,622 - 82,383,340 (+)NCBIT2T-CHM13v2.0
Bahcc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911120,123,696 - 120,183,123 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11120,123,773 - 120,183,108 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3811120,232,870 - 120,292,297 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11120,232,947 - 120,292,296 (+)Ensemblmm10GRCm38
MGSCv3711120,094,261 - 120,153,611 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3611120,095,226 - 120,108,372 (+)NCBIMGSCv36mm8
Celera11131,968,433 - 132,028,159 (+)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1183.96NCBI
Bahcc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810106,020,534 - 106,081,698 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl10106,020,575 - 106,080,285 (+)EnsemblGRCr8
mRatBN7.210105,526,309 - 105,583,320 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl10105,522,172 - 105,583,317 (+)EnsemblmRatBN7.2
Rnor_6.010109,424,306 - 109,482,305 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10109,446,444 - 109,479,891 (+)Ensemblrn6Rnor6.0
Rnor_5.010109,019,977 - 109,077,731 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.410109,726,243 - 109,735,724 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera10104,072,322 - 104,128,914 (+)NCBICelera
RGSC_v3.110109,707,788 - 109,749,670 (+)NCBI
Cytogenetic Map10q32.3NCBI
Bahcc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555061,581,063 - 1,639,054 (-)Ensembl
ChiLan1.0NW_0049555061,578,943 - 1,639,048 (-)NCBIChiLan1.0ChiLan1.0
BAHCC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21997,980,135 - 98,050,904 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan117102,880,344 - 102,951,016 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01775,849,349 - 75,920,011 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11781,583,035 - 81,622,244 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1781,581,000 - 81,619,711 (+)EnsemblpanPan2panpan1.1
BAHCC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.19679,706 - 704,388 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl9679,704 - 704,231 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha91,281,958 - 1,337,559 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.091,273,398 - 1,329,261 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl91,273,401 - 1,330,108 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.191,297,807 - 1,353,421 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.091,423,644 - 1,479,259 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.091,503,599 - 1,559,240 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Bahcc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056021,274,210 - 1,328,429 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365945,083,538 - 5,136,402 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365945,083,530 - 5,137,749 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BAHCC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl121,350,279 - 1,406,780 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1121,350,274 - 1,406,622 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2121,194,571 - 1,251,022 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Bahcc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480110,408,133 - 10,459,840 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462480110,404,029 - 10,461,789 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Bahcc1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1963,712,549 - 63,770,760 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in BAHCC1
1388 total Variants

Expression

RNA-SEQ Expression

ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
76 36 20 36 36 60 20

Sequence


Ensembl Acc Id: ENSCSAT00000000285   ⟹   ENSCSAP00000015770
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl1673,345,772 - 73,411,066 (+)Ensembl
RefSeq Acc Id: XM_008013237   ⟹   XP_008011428
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11673,345,746 - 73,408,585 (+)NCBI
Vero_WHO_p1.0NW_02366607744,718,859 - 44,789,332 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008013239   ⟹   XP_008011430
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11673,345,746 - 73,408,585 (+)NCBI
Vero_WHO_p1.0NW_02366607744,718,859 - 44,789,332 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008013240   ⟹   XP_008011431
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.11673,345,746 - 73,408,585 (+)NCBI
Vero_WHO_p1.0NW_02366607744,718,859 - 44,789,332 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037993727   ⟹   XP_037849655
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607744,721,316 - 44,789,332 (+)NCBI
RefSeq Acc Id: XM_037993728   ⟹   XP_037849656
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607744,722,346 - 44,789,332 (+)NCBI
RefSeq Acc Id: XM_037993729   ⟹   XP_037849657
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607744,747,096 - 44,789,332 (+)NCBI
RefSeq Acc Id: XM_037993730   ⟹   XP_037849658
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366607744,743,882 - 44,789,332 (+)NCBI
Protein Sequences
Protein RefSeqs XP_072861591 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000015770.1
RefSeq Acc Id: XP_008011428   ⟸   XM_008013237
- Peptide Label: isoform X1
RefSeq Acc Id: XP_008011431   ⟸   XM_008013240
- Peptide Label: isoform X3
RefSeq Acc Id: XP_008011430   ⟸   XM_008013239
- Peptide Label: isoform X2
Ensembl Acc Id: ENSCSAP00000015770   ⟸   ENSCSAT00000000285
RefSeq Acc Id: XP_037849655   ⟸   XM_037993727
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037849656   ⟸   XM_037993728
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037849658   ⟸   XM_037993730
- Peptide Label: isoform X4
RefSeq Acc Id: XP_037849657   ⟸   XM_037993729
- Peptide Label: isoform X4


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000002275 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000000285.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.140 UniProtKB/TrEMBL
  2.30.30.490 UniProtKB/TrEMBL
InterPro BAH_dom UniProtKB/TrEMBL
  BAH_domain_protein UniProtKB/TrEMBL
  BAH_sf UniProtKB/TrEMBL
  BAHCC1-like_Tudor UniProtKB/TrEMBL
  TNRC18_BAHCC1-like_SH3 UniProtKB/TrEMBL
  Tudor_BAHCC1 UniProtKB/TrEMBL
NCBI Gene BAHCC1 ENTREZGENE
PANTHER BAH AND COILED-COIL DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  PHD FINGER TRANSCRIPTION FACTOR UniProtKB/TrEMBL
Pfam BAH UniProtKB/TrEMBL
  BAHCC1-like_Tudor UniProtKB/TrEMBL
  SH3_TNRC18 UniProtKB/TrEMBL
PROSITE BAH UniProtKB/TrEMBL
SMART BAH UniProtKB/TrEMBL
UniProt A0A0D9S4I1 ENTREZGENE, UniProtKB/TrEMBL