Speer4c1l (spermatogenesis associated glutamate (E)-rich protein 4C1 like) - Rat Genome Database

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Gene: Speer4c1l (spermatogenesis associated glutamate (E)-rich protein 4C1 like) Rattus norvegicus
Analyze
Symbol: Speer4c1l (Ensembl: LOC685199)
Name: spermatogenesis associated glutamate (E)-rich protein 4C1 like (Ensembl:similar to RIKEN cDNA 5031410I06)
RGD ID: 1597684
Description:
Type: protein-coding (Ensembl: pseudogene)
RefSeq Status: MODEL
Previously known as: disks large homolog 5-like; hypothetical protein LOC685773; hypothetical protein LOC691403; LOC681364; LOC685199; LOC691403; similar to RIKEN cDNA 5031410I06; Speer4c; spermatogenesis associated glutamate (E)-rich protein 4C; uncharacterized protein LOC681364
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr819254,700 - 259,567 (-)NCBIGRCr8
mRatBN7.219247,850 - 253,393 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl19248,616 - 252,920 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01928,292,418 - 28,296,686 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl19458,112 - 462,559 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01939,231,552 - 39,236,791 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41924,253,702 - 24,258,762 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1922,129,687 - 22,174,699 (+)NCBICelera
Cytogenetic Map19p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Speer4c1l
41 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131963836Rat
8552935Pigfal10Plasma insulin-like growth factor 1 level QTL 105.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)19136824771Rat
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124688055Rat
631678Cm9Cardiac mass QTL 94.270.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)19128982497Rat
631681Cm12Cardiac mass QTL 123.330.00053heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)19128982497Rat
9590298Uminl5Urine mineral level QTL 53.590.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)19136824771Rat
9590250Scort11Serum corticosterone level QTL 1123.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19136824771Rat
9590090Insglur8Insulin/glucose ratio QTL 810.810.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)19136824771Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127355345Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000041115
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl19248,616 - 252,920 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000046676   ⟹   ENSRNOP00000051070
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1922,799,994 - 22,804,744 (+)Ensembl
Rnor_6.0 Ensembl19458,112 - 462,559 (-)Ensembl
RefSeq Acc Id: XM_039098087   ⟹   XP_038954015
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr819254,700 - 259,567 (-)NCBI
mRatBN7.219247,850 - 253,393 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038954015 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_038954015   ⟸   XM_039098087
Ensembl Acc Id: ENSRNOP00000051070   ⟸   ENSRNOT00000046676

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-6663 BioCyc
Ensembl Genes ENSRNOG00000049312 Ensembl
  ENSRNOG00000065750 Ensembl
NCBI Gene 685199 ENTREZGENE
PhenoGen Speer4c1l PhenoGen
RatGTEx ENSRNOG00000049312 RatGTEx
  ENSRNOG00000065750 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-12 Speer4c1l  spermatogenesis associated glutamate (E)-rich protein 4C1 like  Speer4c  spermatogenesis associated glutamate (E)-rich protein 4C  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-04-27 Speer4c  spermatogenesis associated glutamate (E)-rich protein 4C  LOC685199  similar to RIKEN cDNA 5031410I06  Name and Symbol changed 629549 APPROVED
2021-03-09 LOC685199  similar to RIKEN cDNA 5031410I06  LOC681364  similar to RIKEN cDNA 5031410I06  Data merged from RGD:1596726 737654 PROVISIONAL
2015-07-29 LOC681364  similar to RIKEN cDNA 5031410I06  LOC691403  hypothetical protein LOC691403  Data merged from RGD:1583970 737654 PROVISIONAL
2013-05-24 LOC685199  similar to RIKEN cDNA 5031410I06  LOC685773  hypothetical protein LOC685773  Data merged from RGD:1590195 1643240 APPROVED
2008-01-09 LOC685199  similar to RIKEN cDNA 5031410I06  LOC684244  similar to RIKEN cDNA 5031410I06  Data merged from RGD:1592703 1643240 APPROVED
2008-01-09 LOC681364  similar to RIKEN cDNA 5031410I06  LOC687370  similar to RIKEN cDNA 5031410I06  Data merged from RGD:1586527 1643240 APPROVED
2006-11-20 LOC685199  similar to RIKEN cDNA 5031410I06      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC681364  similar to RIKEN cDNA 5031410I06      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC684244  similar to RIKEN cDNA 5031410I06      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC685773  hypothetical protein LOC685773      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC691403  hypothetical protein LOC691403      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC687370  similar to RIKEN cDNA 5031410I06      Symbol and Name status set to provisional 70820 PROVISIONAL