Speer4c1l (spermatogenesis associated glutamate (E)-rich protein 4C1 like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Speer4c1l (spermatogenesis associated glutamate (E)-rich protein 4C1 like) Rattus norvegicus
Analyze
Symbol: Speer4c1l
Name: spermatogenesis associated glutamate (E)-rich protein 4C1 like
RGD ID: 1597684
Description:
Type: protein-coding (Ensembl: pseudogene)
RefSeq Status: MODEL
Previously known as: disks large homolog 5-like; hypothetical protein LOC685773; hypothetical protein LOC691403; LOC681364; LOC685199; LOC691403; similar to RIKEN cDNA 5031410I06; Speer4c; spermatogenesis associated glutamate (E)-rich protein 4C; uncharacterized protein LOC681364
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr819254,700 - 259,567 (-)NCBIGRCr8
mRatBN7.219247,850 - 253,393 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl19248,616 - 252,920 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01928,292,418 - 28,296,686 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl19458,112 - 462,559 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.01939,231,552 - 39,236,791 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41924,253,702 - 24,258,762 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1922,129,687 - 22,174,699 (+)NCBICelera
Cytogenetic Map19p14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1549847Bss8Bone structure and strength QTL 84lumbar vertebra strength trait (VT:0010574)vertebra ultimate force (CMO:0001678)19131969901Rat
7411590Foco7Food consumption QTL 76.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)19124694445Rat
10054132Srcrt9Stress Responsive Cort QTL 92.870.0017blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)19127361636Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)193628974246245Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000041115
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl19248,616 - 252,920 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000046676   ⟹   ENSRNOP00000051070
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1922,799,994 - 22,804,744 (+)Ensembl
Rnor_6.0 Ensembl19458,112 - 462,559 (-)Ensembl
RefSeq Acc Id: XM_039098087   ⟹   XP_038954015
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr819254,700 - 259,567 (-)NCBI
mRatBN7.219247,850 - 253,393 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038954015 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_038954015   ⟸   XM_039098087
Ensembl Acc Id: ENSRNOP00000051070   ⟸   ENSRNOT00000046676

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-6663 BioCyc
Ensembl Genes ENSRNOG00000049312 Ensembl
  ENSRNOG00000065750 Ensembl
NCBI Gene 685199 ENTREZGENE
PhenoGen Speer4c1l PhenoGen
RatGTEx ENSRNOG00000049312 RatGTEx
  ENSRNOG00000065750 RatGTEx


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-10-12 Speer4c1l  spermatogenesis associated glutamate (E)-rich protein 4C1 like  Speer4c  spermatogenesis associated glutamate (E)-rich protein 4C  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2023-04-27 Speer4c  spermatogenesis associated glutamate (E)-rich protein 4C  LOC685199  similar to RIKEN cDNA 5031410I06  Name and Symbol changed 629549 APPROVED
2021-03-09 LOC685199  similar to RIKEN cDNA 5031410I06  LOC681364  similar to RIKEN cDNA 5031410I06  Data merged from RGD:1596726 737654 PROVISIONAL
2015-07-29 LOC681364  similar to RIKEN cDNA 5031410I06  LOC691403  hypothetical protein LOC691403  Data merged from RGD:1583970 737654 PROVISIONAL
2013-05-24 LOC685199  similar to RIKEN cDNA 5031410I06  LOC685773  hypothetical protein LOC685773  Data merged from RGD:1590195 1643240 APPROVED
2008-01-09 LOC685199  similar to RIKEN cDNA 5031410I06  LOC684244  similar to RIKEN cDNA 5031410I06  Data merged from RGD:1592703 1643240 APPROVED
2008-01-09 LOC681364  similar to RIKEN cDNA 5031410I06  LOC687370  similar to RIKEN cDNA 5031410I06  Data merged from RGD:1586527 1643240 APPROVED
2006-11-20 LOC685199  similar to RIKEN cDNA 5031410I06      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC681364  similar to RIKEN cDNA 5031410I06      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC684244  similar to RIKEN cDNA 5031410I06      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC685773  hypothetical protein LOC685773      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC691403  hypothetical protein LOC691403      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC687370  similar to RIKEN cDNA 5031410I06      Symbol and Name status set to provisional 70820 PROVISIONAL