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Gene: Zc3h12d (zinc finger CCCH type containing 12D) Rattus norvegicus

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Symbol:

Zc3h12d

Name:

zinc finger CCCH type containing 12D

RGD ID:

1597152

Description:

Predicted to enable RNA endonuclease activity and mRNA binding activity. Predicted to be involved in 3'-UTR-mediated mRNA destabilization; negative regulation of G1/S transition of mitotic cell cycle; and negative regulation of cell growth. Predicted to act upstream of or within mRNA catabolic process and negative regulation of T cell proliferation. Predicted to be located in P-body and nucleoplasm. Predicted to be active in cytoplasmic ribonucleoprotein granule and nucleus. Orthologous to human ZC3H12D (zinc finger CCCH-type containing 12D); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC308266; probable ribonuclease ZC3H12D; similar to zinc finger CCCH-type containing 12D

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	4,131,674 - 4,169,192 (+)	NCBI		GRCr8
mRatBN7.2	1	2,313,110 - 2,348,820 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	2,314,324 - 2,348,819 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	1,964,214 - 1,998,661 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	7,964,619 - 7,999,064 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	2,246,326 - 2,280,771 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	1,937,620 - 1,972,919 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	1,938,419 - 1,972,918 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	3,634,641 - 3,669,534 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	2,507,365 - 2,541,861 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	863,044 - 897,549 (+)	NCBI		Celera
Cytogenetic Map	1	p13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zc3h12d	Rat	hepatocellular carcinoma		ISO	ZC3H12D (Homo sapiens)	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:34545456

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zc3h12d	Rat	15-acetyldeoxynivalenol	increases expression	ISO	ZC3H12D (Homo sapiens)	6480464	15-acetyldeoxynivalenol results in increased expression of ZC3H12D mRNA	CTD	PMID:23792671
Zc3h12d	Rat	17beta-estradiol	multiple interactions	EXP		6480464	[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of ZC3H12D mRNA	CTD	PMID:32741896
Zc3h12d	Rat	17beta-estradiol 3-benzoate	multiple interactions	EXP		6480464	[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of ZC3H12D mRNA	CTD	PMID:32741896
Zc3h12d	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	Zc3h12d (Mus musculus)	6480464	Tetrachlorodibenzodioxin results in increased expression of ZC3H12D mRNA	CTD	PMID:19770486
Zc3h12d	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of ZC3H12D mRNA	CTD	PMID:33387578
Zc3h12d	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	EXP		6480464	Tetrachlorodibenzodioxin affects the expression of ZC3H12D mRNA	CTD	PMID:34747641
Zc3h12d	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Zc3h12d (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of ZC3H12D mRNA	CTD	PMID:21570461
Zc3h12d	Rat	4,4'-sulfonyldiphenol	affects methylation	ISO	Zc3h12d (Mus musculus)	6480464	bisphenol S affects the methylation of ZC3H12D exon and bisphenol S affects the methylation of ZC3H12D gene	CTD	PMID:31683443 and PMID:33297965
Zc3h12d	Rat	acetamide	increases expression	EXP		6480464	acetamide results in increased expression of ZC3H12D mRNA	CTD	PMID:31881176
Zc3h12d	Rat	acrylamide	increases expression	EXP		6480464	Acrylamide results in increased expression of ZC3H12D mRNA	CTD	PMID:28959563
Zc3h12d	Rat	acrylamide	increases expression	ISO	Zc3h12d (Mus musculus)	6480464	Acrylamide results in increased expression of ZC3H12D mRNA	CTD	PMID:30807115
Zc3h12d	Rat	aflatoxin B1	increases expression	ISO	Zc3h12d (Mus musculus)	6480464	Aflatoxin B1 results in increased expression of ZC3H12D mRNA	CTD	PMID:19770486
Zc3h12d	Rat	aflatoxin B1	decreases methylation	ISO	ZC3H12D (Homo sapiens)	6480464	Aflatoxin B1 results in decreased methylation of ZC3H12D intron	CTD	PMID:30157460
Zc3h12d	Rat	Aflatoxin B2 alpha	decreases methylation	ISO	ZC3H12D (Homo sapiens)	6480464	aflatoxin B2 results in decreased methylation of ZC3H12D intron	CTD	PMID:30157460
Zc3h12d	Rat	alpha-Zearalanol	increases expression	EXP		6480464	Zeranol results in increased expression of ZC3H12D mRNA	CTD	PMID:35163327
Zc3h12d	Rat	antirheumatic drug	decreases expression	ISO	ZC3H12D (Homo sapiens)	6480464	Antirheumatic Agents results in decreased expression of ZC3H12D mRNA	CTD	PMID:24449571
Zc3h12d	Rat	aristolochic acid A	increases expression	ISO	ZC3H12D (Homo sapiens)	6480464	aristolochic acid I results in increased expression of ZC3H12D mRNA	CTD	PMID:33212167
Zc3h12d	Rat	benzo[a]pyrene	increases expression	ISO	Zc3h12d (Mus musculus)	6480464	Benzo(a)pyrene results in increased expression of ZC3H12D mRNA	CTD	PMID:19770486 and PMID:22228805
Zc3h12d	Rat	benzo[a]pyrene	decreases expression	ISO	ZC3H12D (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased expression of ZC3H12D mRNA	CTD	PMID:32234424
Zc3h12d	Rat	benzo[a]pyrene	affects methylation	ISO	ZC3H12D (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of ZC3H12D promoter	CTD	PMID:27901495
Zc3h12d	Rat	benzo[a]pyrene	increases methylation	ISO	ZC3H12D (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of ZC3H12D 5' UTR	CTD	PMID:27901495
Zc3h12d	Rat	bisphenol A	affects expression	EXP		6480464	bisphenol A affects the expression of ZC3H12D mRNA	CTD	PMID:25181051
Zc3h12d	Rat	bisphenol A	multiple interactions	ISO	ZC3H12D (Homo sapiens)	6480464	[bisphenol A co-treated with Fulvestrant] affects the methylation of ZC3H12D gene	CTD	PMID:31601247
Zc3h12d	Rat	bisphenol A	decreases methylation	ISO	ZC3H12D (Homo sapiens)	6480464	bisphenol A results in decreased methylation of ZC3H12D gene	CTD	PMID:31601247
Zc3h12d	Rat	bisphenol A	increases expression	ISO	Zc3h12d (Mus musculus)	6480464	bisphenol A results in increased expression of ZC3H12D mRNA	CTD	PMID:38701888
Zc3h12d	Rat	buta-1,3-diene	decreases expression	ISO	Zc3h12d (Mus musculus)	6480464	1 and 3-butadiene results in decreased expression of ZC3H12D mRNA	CTD	PMID:29038090
Zc3h12d	Rat	cadmium dichloride	decreases methylation	EXP		6480464	Cadmium Chloride results in decreased methylation of ZC3H12D promoter	CTD	PMID:22457795
Zc3h12d	Rat	carbon nanotube	increases expression	ISO	Zc3h12d (Mus musculus)	6480464	Nanotubes and Carbon results in increased expression of ZC3H12D mRNA	CTD	PMID:25554681
Zc3h12d	Rat	chlorpyrifos	decreases expression	ISO	Zc3h12d (Mus musculus)	6480464	Chlorpyrifos results in decreased expression of ZC3H12D mRNA	CTD	PMID:37019170
Zc3h12d	Rat	cyclosporin A	decreases expression	ISO	ZC3H12D (Homo sapiens)	6480464	Cyclosporine results in decreased expression of ZC3H12D mRNA	CTD	PMID:25562108
Zc3h12d	Rat	endosulfan	increases expression	EXP		6480464	Endosulfan results in increased expression of ZC3H12D mRNA	CTD	PMID:29391264
Zc3h12d	Rat	fenthion	decreases expression	ISO	Zc3h12d (Mus musculus)	6480464	Fenthion results in decreased expression of ZC3H12D mRNA	CTD	PMID:34813904
Zc3h12d	Rat	fulvestrant	multiple interactions	ISO	ZC3H12D (Homo sapiens)	6480464	[bisphenol A co-treated with Fulvestrant] affects the methylation of ZC3H12D gene	CTD	PMID:31601247
Zc3h12d	Rat	furan	decreases expression	EXP		6480464	furan results in decreased expression of ZC3H12D mRNA	CTD	PMID:25539665
Zc3h12d	Rat	nickel atom	increases expression	ISO	ZC3H12D (Homo sapiens)	6480464	Nickel results in increased expression of ZC3H12D mRNA	CTD	PMID:24768652
Zc3h12d	Rat	ozone	multiple interactions	ISO	Zc3h12d (Mus musculus)	6480464	[Air Pollutants results in increased abundance of [Ozone co-treated with Soot]] which results in decreased expression of ZC3H12D mRNA	CTD	PMID:34911549
Zc3h12d	Rat	paracetamol	affects expression	ISO	Zc3h12d (Mus musculus)	6480464	Acetaminophen affects the expression of ZC3H12D mRNA	CTD	PMID:17562736
Zc3h12d	Rat	pirinixic acid	increases expression	ISO	Zc3h12d (Mus musculus)	6480464	pirinixic acid results in increased expression of ZC3H12D mRNA	CTD	PMID:23811191
Zc3h12d	Rat	rotenone	increases expression	ISO	Zc3h12d (Mus musculus)	6480464	Rotenone results in increased expression of ZC3H12D mRNA	CTD	PMID:32937126
Zc3h12d	Rat	serpentine asbestos	decreases expression	ISO	ZC3H12D (Homo sapiens)	6480464	Asbestos and Serpentine results in decreased expression of ZC3H12D mRNA	CTD	PMID:21148743
Zc3h12d	Rat	testosterone	multiple interactions	EXP		6480464	[estradiol 3-benzoate co-treated with [Testosterone co-treated with Estradiol]] results in increased expression of ZC3H12D mRNA	CTD	PMID:32741896
Zc3h12d	Rat	thioacetamide	increases expression	EXP		6480464	Thioacetamide results in increased expression of ZC3H12D mRNA	CTD	PMID:34492290
Zc3h12d	Rat	triphenyl phosphate	affects expression	ISO	ZC3H12D (Homo sapiens)	6480464	triphenyl phosphate affects the expression of ZC3H12D mRNA	CTD	PMID:37042841
Zc3h12d	Rat	triptonide	increases expression	ISO	Zc3h12d (Mus musculus)	6480464	triptonide results in increased expression of ZC3H12D mRNA	CTD	PMID:33045310
Zc3h12d	Rat	urethane	decreases expression	ISO	ZC3H12D (Homo sapiens)	6480464	Urethane results in decreased expression of ZC3H12D mRNA	CTD	PMID:28818685
Zc3h12d	Rat	valproic acid	increases methylation	ISO	ZC3H12D (Homo sapiens)	6480464	Valproic Acid results in increased methylation of ZC3H12D gene	CTD	PMID:29154799

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zc3h12d	Rat	3'-UTR-mediated mRNA destabilization	involved_in	ISO	Zc3h12d (Mus musculus)	1624291	PMID:26134560	RGD	PMID:26134560
Zc3h12d	Rat	mRNA catabolic process	acts_upstream_of_or_within	ISO	Zc3h12d (Mus musculus)	1624291	MGI:5588370 PMID:24415781	RGD	PMID:24415781
Zc3h12d	Rat	negative regulation of cell growth	involved_in	ISO	ZC3H12D (Homo sapiens) more ...	1624291	PMID:19531561	RGD	PMID:19531561
Zc3h12d	Rat	negative regulation of G1/S transition of mitotic cell cycle	involved_in	ISO	ZC3H12D (Homo sapiens) more ...	1624291	PMID:19531561	RGD	PMID:19531561
Zc3h12d	Rat	negative regulation of T cell proliferation	acts_upstream_of_or_within	ISO	Zc3h12d (Mus musculus)	1624291	MGI:5588370 PMID:24415781	RGD	PMID:24415781
Zc3h12d	Rat	T cell proliferation	acts_upstream_of	ISO	Zc3h12d (Mus musculus)	1624291	MGI:5588370 PMID:24415781	RGD	PMID:24415781

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zc3h12d	Rat	cytoplasm	located_in	ISO	ZC3H12D (Homo sapiens) more ...	1624291	PMID:19531561	RGD	PMID:19531561
Zc3h12d	Rat	cytoplasmic ribonucleoprotein granule	located_in	ISO	ZC3H12D (Homo sapiens) and UniProtKB:A2A288-1	1624291		RGD	GO_REF:0000052
Zc3h12d	Rat	cytoplasmic ribonucleoprotein granule	is_active_in	IBA	PANTHER:PTN001767779 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Zc3h12d	Rat	nucleoplasm	located_in	IEA	UniProtKB:A2A288 and ensembl:ENSP00000386616	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Zc3h12d	Rat	nucleoplasm	located_in	ISO	ZC3H12D (Homo sapiens) and UniProtKB:A2A288-1	1624291		RGD	GO_REF:0000052
Zc3h12d	Rat	nucleus	located_in	ISO	ZC3H12D (Homo sapiens) and UniProtKB:A2A288-4	1624291	PMID:19531561	RGD	PMID:19531561
Zc3h12d	Rat	nucleus	is_active_in	IBA	MGI:2136825 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Zc3h12d	Rat	P-body	located_in	ISO	ZC3H12D (Homo sapiens)	1624291	PMID:24415781 and PMID:26134560	RGD	PMID:24415781 and PMID:26134560

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Zc3h12d	Rat	mRNA binding	enables	IBA	MGI:2385891 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Zc3h12d	Rat	protein binding	enables	ISO	ZC3H12D (Homo sapiens)	1624291	UniProtKB:Q5D1E8 and PMID:26134560	RGD	PMID:26134560
Zc3h12d	Rat	RNA endonuclease activity	enables	IBA	MGI:2385891 more ...	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Zc3h12d	Rat	zinc ion binding	enables	IEA	UniProtKB-KW:KW-0863	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:19531561	PMID:24415781	PMID:24721400	PMID:26134560

Zc3h12d
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	4,131,674 - 4,169,192 (+)	NCBI		GRCr8
mRatBN7.2	1	2,313,110 - 2,348,820 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	2,314,324 - 2,348,819 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	1,964,214 - 1,998,661 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	7,964,619 - 7,999,064 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	2,246,326 - 2,280,771 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	1,937,620 - 1,972,919 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	1,938,419 - 1,972,918 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	3,634,641 - 3,669,534 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	2,507,365 - 2,541,861 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	1	863,044 - 897,549 (+)	NCBI		Celera
Cytogenetic Map	1	p13	NCBI

ZC3H12D
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	149,446,795 - 149,485,014 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	149,446,795 - 149,485,014 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	149,767,931 - 149,806,150 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	149,812,571 - 149,847,723 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	6	150,503,861 - 150,541,240 (-)	NCBI		Celera
Cytogenetic Map	6	q25.1	NCBI
HuRef	6	147,335,524 - 147,372,891 (-)	NCBI		HuRef
CHM1_1	6	150,033,515 - 150,070,897 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	150,646,494 - 150,684,730 (-)	NCBI		T2T-CHM13v2.0

Zc3h12d
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	7,708,087 - 7,746,161 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	7,708,234 - 7,746,160 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	7,832,323 - 7,870,397 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	7,832,470 - 7,870,396 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	7,552,268 - 7,590,195 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	7,522,660 - 7,560,586 (+)	NCBI		MGSCv36	mm8
Celera	10	7,711,148 - 7,749,061 (+)	NCBI		Celera
Cytogenetic Map	10	A1	NCBI
cM Map	10	2.44	NCBI

Zc3h12d
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955439	11,768,812 - 11,785,230 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955439	11,761,099 - 11,787,508 (+)	NCBI	ChiLan1.0	ChiLan1.0

ZC3H12D
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	169,474,368 - 169,510,614 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	167,365,292 - 167,404,189 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	147,266,039 - 147,304,289 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	151,973,996 - 152,010,309 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	151,974,485 - 151,999,898 (-)	Ensembl	panpan1.1		panPan2

ZC3H12D
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	40,249,856 - 40,279,344 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	40,259,705 - 40,279,888 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	41,087,019 - 41,112,742 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	40,429,790 - 40,455,566 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	40,431,812 - 40,459,442 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	40,306,086 - 40,331,843 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	40,171,027 - 40,196,784 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	40,511,853 - 40,537,572 (-)	NCBI		UU_Cfam_GSD_1.0

Zc3h12d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	135,202,865 - 135,228,936 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936489	2,455,728 - 2,472,328 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936489	2,454,889 - 2,472,392 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ZC3H12D
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	16,465,252 - 16,498,971 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	16,463,532 - 16,498,974 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	18,783,708 - 18,819,632 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ZC3H12D
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	22,152,938 - 22,195,470 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	22,158,259 - 22,194,514 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	198,177,140 - 198,214,289 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Zc3h12d
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624785	8,588,480 - 8,613,199 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Zc3h12d
187 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	222
Count of miRNA genes:	153
Interacting mature miRNAs:	188
Transcripts:	ENSRNOT00000065646
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1600360	Mcs16	Mammary carcinoma susceptibility QTL 16	2.4		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	1	2244390	43433040	Rat
2298546	Neuinf4	Neuroinflammation QTL 4	5.1		nervous system integrity trait (VT:0010566)	spinal cord RT1-B protein level (CMO:0002132)	1	1	28736750	Rat
2313090	Bmd69	Bone mineral density QTL 69	4.4	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	1	1	32356093	Rat
1578650	Bmd6	Bone mineral density QTL 6	12.2		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	1	509108	43284926	Rat
1354647	Despr8	Despair related QTL 8		0.0000341	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	1	1	24744506	Rat
1578651	Bmd7	Bone mineral density QTL 7	14.2		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	1	509108	43284926	Rat
1578669	Bss9	Bone structure and strength QTL 9	6.3		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	1	509108	43284926	Rat
1554320	Bmd1	Bone mineral density QTL 1	12.2	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	1	509108	86060548	Rat
2313070	Bss52	Bone structure and strength QTL 52	4.4	0.0001	body length (VT:0001256)	body length (CMO:0000013)	1	1	32356093	Rat
2313053	Bss51	Bone structure and strength QTL 51	3.8	0.0001	tibia length (VT:0004357)	tibia length (CMO:0000450)	1	1	32356093	Rat
738020	Pia8	Pristane induced arthritis QTL 8	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	1	65833076	Rat

BQ196677

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	1	4,168,728 - 4,168,908 (+)	Marker Load Pipeline
mRatBN7.2	1	2,348,356 - 2,348,536 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	1,972,456 - 1,972,635	NCBI	Rnor6.0
Rnor_5.0	1	3,669,071 - 3,669,250	UniSTS	Rnor5.0
RGSC_v3.4	1	2,541,399 - 2,541,578	UniSTS	RGSC3.4
Celera	1	897,087 - 897,266	UniSTS
RH 3.4 Map	1	14.6	UniSTS
Cytogenetic Map	1	p13	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001107469	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006227616	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000065646 ⟹ ENSRNOP00000059263

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	1	2,314,324 - 2,348,819 (+)	Ensembl
Rnor_6.0 Ensembl	1	1,938,419 - 1,972,918 (+)	Ensembl

RefSeq Acc Id:

NM_001107469 ⟹ NP_001100939

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	4,134,697 - 4,169,191 (+)	NCBI
mRatBN7.2	1	2,314,324 - 2,348,819 (+)	NCBI
Rnor_6.0	1	1,938,419 - 1,972,918 (+)	NCBI
Rnor_5.0	1	3,634,641 - 3,669,534 (+)	NCBI
RGSC_v3.4	1	2,507,365 - 2,541,861 (+)	RGD
Celera	1	863,044 - 897,549 (+)	RGD

Sequence:

show sequence

GCGAGCACTCCCTAGTTGAAAAGAGAGGGTCAGTGTGAAGGCTCAGGCAGCTGGGCCAAGTCTGCTGGGAGAGCACGAGGGACACACCTGCTGCTCATGCCAGTGCAGCTCTGCCAGGAGGAAGCTCG
GGGCAGGAGCCGGGCCAAGCAACAGTTGGCACGATATGGAGCGTCGGGGCAAGATGGAATTTTTCCAGAAACTGGGCTACAGCCAGGAGGACGTGGTCAGGGTGCTGGGCAAACTGGGTGACGGTGCC
TTGGTCAATGACGTGCTGCAAGAGTTGATCCAGACCGGCAGCCGCCCAAAGGCCCAGGAGGATCCAGCCAATGGCACCGGGATAGTGCTCATGCCTCGGGGATGCTGCGGGGTTCGAGACTCTGCCCA
GCAGGGCCTGGGACTAGGCCTAGAAGAGGCTGGCGGAGATCCAGCCAGCTTCCTGCGGCCCATAGTGATCGATGGCAGCAATGTGGCTATGAGTCATGGAAATAAAGAAGCCTTCTCTTGCCGGGGAA
TTCGTCTGGCCGTGGACTGGTTCAGGGACAGAGGACACACCTACATCAAGGTTTTTGTCCCATCTTGGAGAAAAGAGCCATCAAGGTCTGATACCCCTATCAGAGAACAGCACGTGTTGGAGGAACTG
GAGCGACAGGCTGTGCTGGTGTACACCCCATCCCGCAAGGTGAACGGCAAGCGAGTGGTCTGCTACGACGATCGCTACATCGTGAAGCTGGCCTATGAGAAGGATGGCGTCATTGTCTCCAATGACAA
CTACCGGGACCTGCAGAATGAGAACCCGGAGTGGAAATGGTTCATTGAGCAGCGGCTACTCATGTTCTCCTTTGTAAATGACAGGTTCATGCCTCCTGATGACCCCCTCGGCCGTCGAGGACCAACAC
TAAGCAATTTCCTAAGCAAGAAGCCAAGGCCCCCAGAGCCATCCTGGCAGCACTGTCCCTATGGCAAGAAATGCACCTACGGGGTCAAGTGCAGATTCTACCACCCGGAGAGACCACACCAAGGGCAG
CTGCCGGTGGCAGACGAACTCCGTGCCAAGACGCGGGCTTGGCCGGGTGGTGGCGCCGGGGAGTCGCGGCCACCGAGCGCCCGGAGCCGTCCCGGAGCAGCCCGGCCGCTTCCCCTGGAGCCCGGCGC
TCACAACCCCACGCCGGCCCCGCAGCCCGCGGCCCTGACAGCCCTGAACCAGAGCTTCGCTCGGCTGACCTTCAGCGATACTGCGGCCAGTGGCGTCGTGTCCCTGTCGCGTGGGCCTGACCGGATGC
CCACGAGTGGTCCCACGTCCTGGGCCTCGCCATCCCTTCGCGCGGGCAGCGTTGCCACCCAAGGGTCGCCGGGTCTGCGGTGCCTCCGGACTCCGAACAGCCTGCTCTCTCCGGGCGATCTCGGGTCC
CCAATCTGCCCACAGTCCCAGCCATCGGACAGACACTGTTCCAGGGGCATGCACAGTGACCTGCCTCCCCAGCGCAGACCGCCGGAAGACCCGTGGGCCTTCCTGCCCAGCTCCTATGGTTATTTGAA
TCACTCGGTTTGGGCTGAGTCGGCTTGGAGCGAGAACACCTTTGGAAGACCTTCGGGGTCAGCACAATCCACCATCAACAGTGGGGGAACTCGCGCTTCACTCTGCAGCGCCTTCCCATCTGACCGAG
AGGACCCTGTTATGGCCTCGGATCCTGTGCTCTCAGACGTGGCCCTGCGCACCCTCCTGCAGAGATCCCAAAAGACTGGTGCTCCGTTGGGGGATCCTTAGGGGACAGGTTCATAACACTGCAAGGGG
TGGTGGCCCAGGCTTGACTCTCTGCTTGGGTAGGTGGGATACAAGATGCTTGTTAATTTGGATGTGTCCCTGCAGTTGAACGACATTTTTTAAAGGTGGTCTCGGTGGGAGCTTTCTCAATCCTCAGT
GGTGGATACCGGTGGGGATCTTGGGGATGCTCTCTGAAGCCAGGGTCTGCTTCATGAGCAGGATGATTTCTGATGTATTTGGAAGGCTTTGTCCAGAGCACATCTAAATCCGGTTCTAACTAGCATCC
AAAAATGTTTCAGCTGGTCATCACCGCTAGCCAAGGTGATTGGCCTGAGTTTGACATAAACTCTTGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAGAATTCTAG
AAAACCAGGAGAACTTAACATGTCGTTGTAGTTGAAAGATTGAAAAAGGCTGGTAAGTCAGTCTTGACTTTTGTGGTGTCAAATGATGTATAACACATGTTCAGGTGACACAGGAAGGAAGGAAGGTA
TTGCTGTCTGGAGTTTTCAAGTCACTATTGCTAATCTCACTCATAGGGGAAACTCAGCCTTGTGTAAATTTTACTGTGGGGTTGTCCCAGGGGAACTTGATCCTACGGGTCTCCTCCCTGGGTTTTTA
TTCTTTTTGTACATACATACCATATTACCGAAACATCACAACACACACGCACACGTACACGCACACAACCTTGCTCAAGACTCAGCCTGGCTTTTTTTTTTTTTTTTTAAATCAGCCTTCCTTTGTGT
GATTCTACAAAATTTAAACTGCACCTTATAGAGATAGGATTTCAATCTACCCACCACCCCCTTAAAAAACAACAACAACAACAACAACTCAGCAGTCAACAACAATCCAGGTTGGTCAGCATAGAGTT
GGATTCTGGTAGAGGTTTATTGCAACTTTACTTAGCTGTGTCTTCTAGATAACTTCTGCTCTGGGTTTTGTGGGGAGGAGAGGCTCATTCATTCACAAGGGACAAGAAATGATACAGTGTTGCTGGGG
CATGGGCCCAGCATTCTGAGGGAACCCAGCATCTGTAGGCTGCACCCACATGTTCCAGTTACAACGGCAGCCTGCCAGGTTGTAACTCATTTGTTCCTGAGGGACTTAGTAGTTCATTTGGTCAGAGA
GAGTCAGAAGGGACCTGCCAATGGGACCTGTTTGCCAAAGCCTCCGAGTTCCTGCAGTGTGGTAGGCACATTTGGGAAACACCCCTTCATTGCCTCAGGGAAAATGCCGTTGCAGTATTCATGGTAAA
CTTGACTCCTTGGCACCAGGGTAGCCATATGGCTTCCTGGAAGTCCTCCCTCTTTTAAAACCACCTTCTTAGCATGGCTTCTTGTGGATCTGTTCCTCACACCCTTTTCAAAACGTATGCTATTCTCA
GACTGTTGCTTCTTATCTTGAGTCCCTGTCCTGAAGAGGGTTTGCTCTTTCTAGATCTTTTGAAGTTTTTCCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTTTT
CATAGGACTCTTAGAGCCGCTGTTTGATTCCCTGGTCTTGTCCCCTGCTTCAAATCAATCCATTGCGAATTTACAGTTGGAAATGTTTAAACTGCTTCCTATGAAGACAAGTTTGAGTTTTAGTAAGC
TGTAAAGCTATTTTATTTGGTTCACTGTGATTAAGAAAAAAGGGAAGGAAAAAAAGAGGTGTGTGTGTGTAGGGGAAAGAAACAACACATCTCAGATGTAATCACCTTTGGAAAATTCCAAAGTCTTA
GTATGTCCTTGTGACACAAAACGGTGGATGAGAGACATAAATGAACTGTCCCTAGTTGCATAGCTGTTAACCATGCTCCAAAAATAAACCACCTTTTCCACACCTGA

hide sequence

RefSeq Acc Id:

XM_006227616 ⟹ XP_006227678

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	4,131,674 - 4,169,192 (+)	NCBI
mRatBN7.2	1	2,313,110 - 2,348,820 (+)	NCBI
Rnor_6.0	1	1,937,620 - 1,972,919 (+)	NCBI
Rnor_5.0	1	3,634,641 - 3,669,534 (+)	NCBI

Sequence:

show sequence

CAGTGCAAACAGGAGGACCTGAGTTCTAATCTCCACCATCCAGGCAAAAGCCAGACCATTCTTACTTCCTCAGAACCAAATCCTGTGTTCAAAACTCAGCTTAACTCCCTGACTACATCCTTGAGCAA
GTCATTGTTAGGGGTGTACAGAAATCCGAGTCTGCTCTCTGTATAGTGGCGGAATGGTGCGCTGTGTAGGCCTGGGATCAGACTTGACCTCCTCAGTTAGAGAGAGCTGTCTCTCACTCTACGTAGAC
AACAGTAAAGAGAGCCGTGGAGCCCTTTTCCCACAGAGGTTCATTACTTGTTGGGACTCCTGGTTTTGTGAATAACTGGCAGAATCCTCCCTGCCCAACCTCCAGGTGCAACTTGTAGCGTCTTTGTC
CTTTCTCCGCTTCCTTCTGACAGTCTGTGGTCGTTTTTTATAGCTGAGCATTAACTTCCCCTAGGAGCATCTTCAAGCAGATGGGCTTCCCAGGCACCAGGAGTGGGAACTTAGCAGCTGTTCTCACC
CTCTGGATCCAGGGTGCTTTTTCCACTTGAACTCCTGGCCGTCCCGGGAGGAGGCGCGATTGTTTTGCATGGTGGCTGTACTTTGATTCCGTTGACTGGGGCGGAGGCGTGAACTTCCTACCCCTCAC
TGCTTTCTTCCTTTTCTTTTTAACACAGAGAGTAAGGACCTTTTGCAGCTGAACACGACTAGTGGCAGGAAGTGGAGCACAGGCATGGATCAGCTTCTAGCAGGGGTGTGGCCTGGGCTTTCTGCCCT
CCTCTGATTCCAGCAACTCCTGAGGGACTGAGCGAGCACTCCCTAGTTGAAAAGAGAGGGTCAGTGTGAAGGCTCAGGCAGCTGGGCCAAGTCTGCTGGGAGAGCACGAGGGACACACCTGCTGGTGA
GTGCTTGCTGCCCCGCTATCAGTTAACGTGGCAGGCACAGTGCAGACTTCAGTCAAGGGCATGGGCGAAGGGCATGTTTGAGACAGGTGTGTGAGTGAGGACTGCGCTGAACGCTCTGGTTTCTCACA
CCTGAGAAGCTCTGCTAGGTGTTCAAATTACGGAAATACGCTCATGCCAGTGCAGCTCTGCCAGGAGGAAGCTCGGGGCAGGAGCCGGGCCAAGCAACAGTTGGCACGATATGGAGCGTCGGGGCAAG
ATGGAATTTTTCCAGAAACTGGGCTACAGCCAGGAGGACGTGGTCAGGGTGCTGGGCAAACTGGGTGACGGTGCCTTGGTCAATGACGTGCTGCAAGAGTTGATCCAGACCGGCAGCCGCCCAAAGGC
CCAGGAGGATCCAGCCAATGGCACCGGGATAGTGCTCATGCCTCGGGGATGCTGCGGGGTTCGAGACTCTGCCCAGCAGGGCCTGGGACTAGGCCTAGAAGAGGCTGGCGGAGATCCAGCCAGCTTCC
TGCGGCCCATAGTGATCGATGGCAGCAATGTGGCTATGAGTCATGGAAATAAAGAAGCCTTCTCTTGCCGGGGAATTCGTCTGGCCGTGGACTGGTTCAGGGACAGAGGACACACCTACATCAAGGTT
TTTGTCCCATCTTGGAGAAAAGAGCCATCAAGGTCTGATACCCCTATCAGAGAACAGCACGTGTTGGAGGAACTGGAGCGACAGGCTGTGCTGGTGTACACCCCATCCCGCAAGGTGAACGGCAAGCG
AGTGGTCTGCTACGACGATCGCTACATCGTGAAGCTGGCCTATGAGAAGGATGGCGTCATTGTCTCCAATGACAACTACCGGGACCTGCAGAATGAGAACCCGGAGTGGAAATGGTTCATTGAGCAGC
GGCTACTCATGTTCTCCTTTGTAAATGACAGGTTCATGCCTCCTGATGACCCCCTCGGCCGTCGAGGACCAACACTAAGCAATTTCCTAAGCAAGAAGCCAAGGCCCCCAGAGCCATCCTGGCAGCAC
TGTCCCTATGGCAAGAAATGCACCTACGGGGTCAAGTGCAGATTCTACCACCCGGAGAGACCACACCAAGGGCAGCTGCCGGTGGCAGACGAACTCCGTGCCAAGACGCGGGCTTGGCCGGGTGGTGG
CGCCGGGGAGTCGCGGCCACCGAGCGCCCGGAGCCGTCCCGGAGCAGCCCGGCCGCTTCCCCTGGAGCCCGGCGCTCACAACCCCACGCCGGCCCCGCAGCCCGCGGCCCTGACAGCCCTGAACCAGA
GCTTCGCTCGGCTGACCTTCAGCGATACTGCGGCCAGTGGCGTCGTGTCCCTGTCGCGTGGGCCTGACCGGATGCCCACGAGTGGTCCCACGTCCTGGGCCTCGCCATCCCTTCGCGCGGGCAGCGTT
GCCACCCAAGGGTCGCCGGGTCTGCGGTGCCTCCGGACTCCGAACAGCCTGCTCTCTCCGGGCGATCTCGGGTCCCCAATCTGCCCACAGTCCCAGCCATCGGACAGACACTGTTCCAGGGGCATGCA
CAGTGACCTGCCTCCCCAGCGCAGACCGCCGGAAGACCCGTGGGCCTTCCTGCCCAGCTCCTATGGTTATTTGAATCACTCGGTTTGGGCTGAGTCGGCTTGGAGCGAGAACACCTTTGGAAGACCTT
CGGGGTCAGCACAATCCACCATCAACAGTGGGGGAACTCGCGCTTCACTCTGCAGCGCCTTCCCATCTGACCGAGAGGACCCTGTTATGGCCTCGGATCCTGTGCTCTCAGACGTGGCCCTGCGCACC
CTCCTGCAGAGATCCCAAAAGACTGGTGCTCCGTTGGGGGATCCTTAGGGGACAGGTTCATAACACTGCAAGGGGTGGTGGCCCAGGCTTGACTCTCTGCTTGGGTAGGTGGGATACAAGATGCTTGT
TAATTTGGATGTGTCCCTGCAGTTGAACGACATTTTTTAAAGGTGGTCTCGGTGGGAGCTTTCTCAATCCTCAGTGGTGGATACCGGTGGGGATCTTGGGGATGCTCTCTGAAGCCAGGGTCTGCTTC
ATGAGCAGGATGATTTCTGATGTATTTGGAAGGCTTTGTCCAGAGCACATCTAAATCCGGTTCTAACTAGCATCCAAAAATGTTTCAGCTGGTCATCACCGCTAGCCAAGGTGATTGGCCTGAGTTTG
ACATAAACTCTTGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAGAATTCTAGAAAACCAGGAGAACTTAACATGTCGTTGTAGTTGAAAGATTGAAAAAGGCTGG
TAAGTCAGTCTTGACTTTTGTGGTGTCAAATGATGTATAACACATGTTCAGGTGACACAGGAAGGAAGGAAGGTATTGCTGTCTGGAGTTTTCAAGTCACTATTGCTAATCTCACTCATAGGGGAAAC
TCAGCCTTGTGTAAATTTTACTGTGGGGTTGTCCCAGGGGAACTTGATCCTACGGGTCTCCTCCCTGGGTTTTTATTCTTTTTGTACATACATACCATATTACCGAAACATCACAACACACACGCACA
CGTACACGCACACAACCTTGCTCAAGACTCAGCCTGGCTTTTTTTTTTTTTTTTTAAATCAGCCTTCCTTTGTGTGATTCTACAAAATTTAAACTGCACCTTATAGAGATAGGATTTCAATCTACCCA
CCACCCCCTTAAAAAACAACAACAACAACAACAACTCAGCAGTCAACAACAATCCAGGTTGGTCAGCATAGAGTTGGATTCTGGTAGAGGTTTATTGCAACTTTACTTAGCTGTGTCTTCTAGATAAC
TTCTGCTCTGGGTTTTGTGGGGAGGAGAGGCTCATTCATTCACAAGGGACAAGAAATGATACAGTGTTGCTGGGGCATGGGCCCAGCATTCTGAGGGAACCCAGCATCTGTAGGCTGCACCCACATGT
TCCAGTTACAACGGCAGCCTGCCAGGTTGTAACTCATTTGTTCCTGAGGGACTTAGTAGTTCATTTGGTCAGAGAGAGTCAGAAGGGACCTGCCAATGGGACCTGTTTGCCAAAGCCTCCGAGTTCCT
GCAGTGTGGTAGGCACATTTGGGAAACACCCCTTCATTGCCTCAGGGAAAATGCCGTTGCAGTATTCATGGTAAACTTGACTCCTTGGCACCAGGGTAGCCATATGGCTTCCTGGAAGTCCTCCCTCT
TTTAAAACCACCTTCTTAGCATGGCTTCTTGTGGATCTGTTCCTCACACCCTTTTCAAAACGTATGCTATTCTCAGACTGTTGCTTCTTATCTTGAGTCCCTGTCCTGAAGAGGGTTTGCTCTTTCTA
GATCTTTTGAAGTTTTTCCTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTTTTCATAGGACTCTTAGAGCCGCTGTTTGATTCCCTGGTCTTGTCCCCTGCTTCAA
ATCAATCCATTGCGAATTTACAGTTGGAAATGTTTAAACTGCTTCCTATGAAGACAAGTTTGAGTTTTAGTAAGCTGTAAAGCTATTTTATTTGGTTCACTGTGATTAAGAAAAAAGGGAAGGAAAAA
AAGAGGTGTGTGTGTGTAGGGGAAAGAAACAACACATCTCAGATGTAATCACCTTTGGAAAATTCCAAAGTCTTAGTATGTCCTTGTGACACAAAACGGTGGATGAGAGACATAAATGAACTGTCCCT
AGTTGCATAGCTGTTAACCATGCTCCAAAAATAAACCACCTTTTCCACACCTGAA

hide sequence


Protein RefSeqs	NP_001100939	(Get FASTA)	NCBI Sequence Viewer
	XP_006227678	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL93693	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000059263.1

RefSeq Acc Id:

NP_001100939 ⟸ NM_001107469

- UniProtKB:

D4A0I4 (UniProtKB/TrEMBL), A6JP21 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MERRGKMEFFQKLGYSQEDVVRVLGKLGDGALVNDVLQELIQTGSRPKAQEDPANGTGIVLMPRGCCGVRDSAQQGLGLGLEEAGGDPASFLRPIVIDGSNVAMSHGNKEAFSCRGIRLAVDWFRDRG
HTYIKVFVPSWRKEPSRSDTPIREQHVLEELERQAVLVYTPSRKVNGKRVVCYDDRYIVKLAYEKDGVIVSNDNYRDLQNENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRRGPTLSNFLSKKPRPP
EPSWQHCPYGKKCTYGVKCRFYHPERPHQGQLPVADELRAKTRAWPGGGAGESRPPSARSRPGAARPLPLEPGAHNPTPAPQPAALTALNQSFARLTFSDTAASGVVSLSRGPDRMPTSGPTSWASPS
LRAGSVATQGSPGLRCLRTPNSLLSPGDLGSPICPQSQPSDRHCSRGMHSDLPPQRRPPEDPWAFLPSSYGYLNHSVWAESAWSENTFGRPSGSAQSTINSGGTRASLCSAFPSDREDPVMASDPVLS
DVALRTLLQRSQKTGAPLGDP

hide sequence

RefSeq Acc Id:	XP_006227678 ⟸ XM_006227616
- Peptide Label:	isoform X1
- UniProtKB:	D4A0I4 (UniProtKB/TrEMBL), A6JP21 (UniProtKB/TrEMBL)
- Sequence:	show sequence MERRGKMEFFQKLGYSQEDVVRVLGKLGDGALVNDVLQELIQTGSRPKAQEDPANGTGIVLMPR GCCGVRDSAQQGLGLGLEEAGGDPASFLRPIVIDGSNVAMSHGNKEAFSCRGIRLAVDWFRDRGHTYIKVFVPSWRKEPSRSDTPIREQHVLEELERQAVLVYTPSRKVNGKRVVCYDDRYIVKLAYE KDGVIVSNDNYRDLQNENPEWKWFIEQRLLMFSFVNDRFMPPDDPLGRRGPTLSNFLSKKPRPPEPSWQHCPYGKKCTYGVKCRFYHPERPHQGQLPVADELRAKTRAWPGGGAGESRPPSARSRPGA ARPLPLEPGAHNPTPAPQPAALTALNQSFARLTFSDTAASGVVSLSRGPDRMPTSGPTSWASPSLRAGSVATQGSPGLRCLRTPNSLLSPGDLGSPICPQSQPSDRHCSRGMHSDLPPQRRPPEDPWA FLPSSYGYLNHSVWAESAWSENTFGRPSGSAQSTINSGGTRASLCSAFPSDREDPVMASDPVLSDVALRTLLQRSQKTGAPLGDP hide sequence

Ensembl Acc Id:

ENSRNOP00000059263 ⟸ ENSRNOT00000065646

Protein Domains

C3H1-type

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A0I4-F1-model_v2	AlphaFold	D4A0I4	1-533	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-62444	BioCyc
Ensembl Genes	ENSRNOG00000016041	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000065646.2	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.11980	UniProtKB/TrEMBL
InterPro	Rege-1_UBA-like	UniProtKB/TrEMBL
	RNase_Zc3h12	UniProtKB/TrEMBL
	ZC3H12/N4BP1_RNase_Reg	UniProtKB/TrEMBL
	Znf_CCCH	UniProtKB/TrEMBL
KEGG Report	rno:308266	UniProtKB/TrEMBL
NCBI Gene	308266	ENTREZGENE
PANTHER	N4BP1-RELATED	UniProtKB/TrEMBL
	RIBONUCLEASE ZC3H12D-RELATED	UniProtKB/TrEMBL
Pfam	RNase_Zc3h12a	UniProtKB/TrEMBL
	UBA_6	UniProtKB/TrEMBL
PhenoGen	Zc3h12d	PhenoGen
PROSITE	ZF_C3H1	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000016041	RatGTEx
UniProt	A6JP21	ENTREZGENE, UniProtKB/TrEMBL
	D4A0I4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-04	Zc3h12d	zinc finger CCCH type containing 12D	LOC308266	similar to zinc finger CCCH-type containing 12D	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC308266	similar to zinc finger CCCH-type containing 12D			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Disease Annotations - CTD