Apex2 (Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCr8 | X | 22,914,943 - 22,937,713 (-) | NCBI | GRCr8 | GRCr8 | | GRCr8 | GRCr8 Ensembl | X | 22,914,944 - 22,936,011 (-) | Ensembl | | | | GRCr8 | mRatBN7.2 | X | 19,425,684 - 19,508,459 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | X | 19,487,419 - 19,508,439 (-) | Ensembl | | | | mRatBN7.2 | UTH_Rnor_SHR_Utx | X | 16,917,014 - 16,943,392 (-) | NCBI | UTH_Rnor_SHR_Utx | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | X | 23,180,186 - 23,207,908 (+) | NCBI | UTH_Rnor_SHRSP_BbbUtx_1.0 | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | X | 20,000,651 - 20,021,638 (-) | NCBI | UTH_Rnor_WKY_Bbb_1.0 | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | X | 23,146,085 - 23,166,676 (+) | NCBI | Rnor_6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | X | 23,146,085 - 23,166,675 (+) | Ensembl | | | rn6 | Rnor6.0 | Rnor_5.0 | X | 23,566,192 - 23,586,783 (+) | NCBI | Rnor_5.0 | Rnor_5.0 | rn5 | | RGSC_v3.4 | X | 39,811,484 - 39,832,225 (-) | NCBI | RGSC_v3.4 | RGSC_v3.4 | rn4 | | Celera | X | 19,761,515 - 19,779,599 (-) | NCBI | | Celera | | | Cytogenetic Map | X | q12 | NCBI | | | | |
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APEX2 (Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCh38 | X | 55,000,363 - 55,009,057 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | X | 55,000,331 - 55,009,057 (+) | Ensembl | | | hg38 | GRCh38 | GRCh37 | X | 55,026,796 - 55,035,490 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | X | 55,043,505 - 55,050,937 (+) | NCBI | Build 36 | Build 36 | hg18 | NCBI36 | Build 34 | X | 54,909,800 - 54,917,232 | NCBI | | | | | Celera | X | 58,861,923 - 58,869,355 (+) | NCBI | | Celera | | | Cytogenetic Map | X | p11.21 | NCBI | | | | | HuRef | X | 52,077,699 - 52,085,248 (+) | NCBI | | HuRef | | | CHM1_1 | X | 55,016,795 - 55,024,345 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | X | 54,293,489 - 54,302,183 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Apex2 (Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCm39 | X | 149,286,625 - 149,371,175 (-) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | X | 149,302,515 - 149,372,864 (-) | Ensembl | | GRCm39 Ensembl | | GRCm39 | GRCm38 | X | 150,426,974 - 150,588,206 (-) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | X | 150,519,519 - 150,589,868 (-) | Ensembl | | | mm10 | GRCm38 | MGSCv37 | X | 147,006,050 - 147,022,692 (-) | NCBI | MGSCv37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | X | 145,912,223 - 145,928,865 (-) | NCBI | | MGSCv36 | mm8 | | Celera | X | 133,818,627 - 133,835,339 (+) | NCBI | | Celera | | | Cytogenetic Map | X | F3 | NCBI | | | | | cM Map | X | 68.46 | NCBI | | | | |
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Apex2 (Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChiLan1.0 Ensembl | NW_004955475 | 2,344,087 - 2,359,906 (+) | Ensembl | | | | | ChiLan1.0 | NW_004955475 | 2,343,992 - 2,359,492 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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APEX2 (Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
NHGRI_mPanPan1-v2 | X | 56,396,084 - 56,403,908 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | X | 56,399,691 - 56,407,515 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | X | 47,210,552 - 47,218,320 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | X | 55,442,599 - 55,450,402 (+) | NCBI | PanPan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | X | 55,442,599 - 55,450,402 (+) | Ensembl | | | panPan2 | panpan1.1 |
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APEX2 (Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
CanFam3.1 | X | 46,692,667 - 46,703,309 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | X | 46,693,191 - 46,702,195 (+) | Ensembl | | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | X | 38,028,054 - 38,038,942 (+) | NCBI | Dog10K_Boxer_Tasha | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | X | 46,981,068 - 46,991,960 (+) | NCBI | ROS_Cfam_1.0 | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | X | 46,981,563 - 46,997,086 (+) | Ensembl | | | | ROS_Cfam_1.0 Ensembl | UMICH_Zoey_3.1 | X | 46,490,847 - 46,501,736 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | X | 46,957,419 - 46,968,304 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | X | 46,899,682 - 46,910,572 (+) | NCBI | UU_Cfam_GSD_1.0 | UU_Cfam_GSD_1.0 | | |
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Apex2 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
| Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
HiC_Itri_2 | X | 39,468,146 - 39,477,569 (+) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936751 | 1,807,867 - 1,819,272 (+) | Ensembl | | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936751 | 1,807,867 - 1,817,780 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
|
APEX2 (Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
Sscrofa11.1 Ensembl | X | 47,862,667 - 47,871,184 (+) | Ensembl | | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | X | 47,862,682 - 47,870,579 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | X | 53,798,823 - 53,806,723 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
|
APEX2 (Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChlSab1.1 | X | 51,077,496 - 51,084,787 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | X | 51,077,025 - 51,084,783 (+) | Ensembl | | ChlSab1.1 Ensembl | chlSab2 | Vervet-AGM | Vero_WHO_p1.0 | NW_023666086 | 5,055,784 - 5,063,231 (+) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Apex2 (Heterocephalus glaber - naked mole-rat) |
|