Tceal3 (transcription elongation factor A like 3) - Rat Genome Database

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Gene: Tceal3 (transcription elongation factor A like 3) Rattus norvegicus
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Symbol: Tceal3 (Ensembl: Tceal6)
Name: transcription elongation factor A like 3 (Ensembl:transcription elongation factor A like 6)
RGD ID: 1562504
Description: Orthologous to several human genes including TCEAL3 (transcription elongation factor A like 3); INTERACTS WITH 17alpha-ethynylestradiol; bisphenol A; gentamycin.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC501628; RGD1562504; similar to transcription elongation factor A (SII)-like 3; transcription elongation factor A (SII)-like 3; transcription elongation factor A protein-like 3
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X104,802,966 - 104,804,926 (+)NCBIGRCr8
mRatBN7.2X100,010,677 - 100,012,637 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX100,010,690 - 100,012,654 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 EnsemblX98,337,873 - 98,338,472 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX102,140,850 - 102,142,810 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X105,639,533 - 105,641,493 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X103,208,702 - 103,210,663 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X107,322,077 - 107,324,054 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX107,323,215 - 107,323,814 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl2102,370,158 - 102,370,757 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X107,206,850 - 107,208,820 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X124,311,866 - 124,314,022 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX100,847,323 - 100,849,299 (+)NCBICelera
Cytogenetic MapXq32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:25002582  


Genomics

Comparative Map Data
Tceal3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X104,802,966 - 104,804,926 (+)NCBIGRCr8
mRatBN7.2X100,010,677 - 100,012,637 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX100,010,690 - 100,012,654 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 EnsemblX98,337,873 - 98,338,472 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX102,140,850 - 102,142,810 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X105,639,533 - 105,641,493 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X103,208,702 - 103,210,663 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X107,322,077 - 107,324,054 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX107,323,215 - 107,323,814 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl2102,370,158 - 102,370,757 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X107,206,850 - 107,208,820 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X124,311,866 - 124,314,022 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX100,847,323 - 100,849,299 (+)NCBICelera
Cytogenetic MapXq32NCBI
TCEAL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X103,607,963 - 103,609,927 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX103,607,451 - 103,629,690 (+)EnsemblGRCh38hg38GRCh38
GRCh37X102,862,891 - 102,864,855 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X102,749,490 - 102,751,511 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X102,668,978 - 102,670,999NCBI
CeleraX103,301,848 - 103,303,869 (+)NCBICelera
Cytogenetic MapXq22.2NCBI
HuRefX92,518,565 - 92,523,170 (+)NCBIHuRef
CHM1_1X102,755,836 - 102,757,857 (+)NCBICHM1_1
T2T-CHM13v2.0X102,054,947 - 102,056,911 (+)NCBIT2T-CHM13v2.0
Tceal3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X135,491,586 - 135,569,127 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX135,491,591 - 135,569,127 (+)EnsemblGRCm39 Ensembl
GRCm38X136,590,837 - 136,668,378 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX136,590,842 - 136,668,378 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X133,200,914 - 133,202,916 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X132,012,817 - 132,014,741 (+)NCBIMGSCv36mm8
CeleraX119,949,866 - 119,951,803 (+)NCBICelera
Cytogenetic MapXF1NCBI
cM MapX59.1NCBI
LOC100991183
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X103,219,383 - 103,221,429 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X103,223,032 - 103,224,988 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X92,836,622 - 92,838,858 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X103,217,899 - 103,219,838 (+)NCBIpanpan1.1PanPan1.1panPan2
TCEAL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X77,021,480 - 77,023,881 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX63,250,465 - 63,252,849 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X78,640,224 - 78,642,608 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X76,117,583 - 76,119,967 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X77,804,404 - 77,806,790 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X77,571,450 - 77,573,834 (+)NCBIUU_Cfam_GSD_1.0
Tceal3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X76,945,033 - 76,947,270 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493649910,710,694 - 10,712,884 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TCEAL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1X84,485,887 - 84,490,011 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X98,276,435 - 98,278,805 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Tceal3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624954354,100 - 356,126 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tceal3
3 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:49
Count of miRNA genes:46
Interacting mature miRNAs:46
Transcripts:ENSRNOT00000071874
Prediction methods:Miranda, Pita, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X93956491138956491Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
61431Cia19Collagen induced arthritis QTL 194.4joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X65612192120568734Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
724551Glom1Glomerulus QTL 12.80.0004kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)X75294106120294106Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000071874   ⟹   ENSRNOP00000064154
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX98,337,873 - 98,338,472 (-)Ensembl
Rnor_6.0 EnsemblX107,323,215 - 107,323,814 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000074255   ⟹   ENSRNOP00000066958
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX100,010,690 - 100,012,654 (+)Ensembl
Rnor_6.0 Ensembl2102,370,158 - 102,370,757 (-)Ensembl
RefSeq Acc Id: NM_001401190   ⟹   NP_001388119
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X104,802,966 - 104,804,926 (+)NCBI
mRatBN7.2X100,010,677 - 100,012,637 (+)NCBI
RefSeq Acc Id: XM_063280254   ⟹   XP_063136324
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X104,803,260 - 104,804,926 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001388119 (Get FASTA)   NCBI Sequence Viewer  
  XP_063136324 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Acc Id: ENSRNOP00000064154   ⟸   ENSRNOT00000071874
Ensembl Acc Id: ENSRNOP00000066958   ⟸   ENSRNOT00000074255
RefSeq Acc Id: NP_001388119   ⟸   NM_001401190
- UniProtKB: M0RBL8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063136324   ⟸   XM_063280254
- Peptide Label: isoform X1
- UniProtKB: M0RBL8 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0RBL8-F1-model_v2 AlphaFold M0RBL8 1-199 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562504 AgrOrtholog
BioCyc Gene G2FUF-1616 BioCyc
Ensembl Genes ENSRNOG00000046390 Ensembl
  ENSRNOG00000049020 Ensembl
NCBI Gene 501628 ENTREZGENE
PhenoGen Tceal3 PhenoGen
RatGTEx ENSRNOG00000046390 RatGTEx
  ENSRNOG00000049020 RatGTEx
UniProt M0RBL8 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-19 Tceal3  transcription elongation factor A like 3  Tceal3  transcription elongation factor A (SII)-like 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-05-29 Tceal3  transcription elongation factor A (SII)-like 3  RGD1562504  similar to transcription elongation factor A (SII)-like 3   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1562504  similar to transcription elongation factor A (SII)-like 3   RGD1562504_predicted  similar to transcription elongation factor A (SII)-like 3 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562504_predicted  similar to transcription elongation factor A (SII)-like 3 (predicted)  LOC501628  similar to transcription elongation factor A (SII)-like 3  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC501628  similar to transcription elongation factor A (SII)-like 3      Symbol and Name status set to provisional 70820 PROVISIONAL