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Gene: LINC03040 (long intergenic non-protein coding RNA 3040) Sus scrofa

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Symbol:

LINC03040

Name:

long intergenic non-protein coding RNA 3040

RGD ID:

14236543

Description:

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

C7H6orf223; chromosome 7 C6orf223 homolog; uncharacterized protein C6orf223 homolog

RGD Orthologs

Human

Bonobo

Green Monkey

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	7	38,993,441 - 39,002,331 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	44,763,346 - 44,767,731 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

References

Genomics

Comparative Map Data

LINC03040
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	7	38,993,441 - 39,002,331 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	44,763,346 - 44,767,731 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LINC03040
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	44,000,585 - 44,007,612 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	44,000,580 - 44,007,612 (+)	Ensembl			hg38	GRCh38
GRCh37	6	43,968,322 - 43,975,349 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	44,076,317 - 44,080,865 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	6	45,521,486 - 45,526,844 (+)	NCBI		Celera
Cytogenetic Map	6	p21.1	NCBI
HuRef	6	43,690,033 - 43,695,391 (+)	NCBI		HuRef
CHM1_1	6	43,971,958 - 43,977,316 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	43,832,289 - 43,839,314 (+)	NCBI		T2T-CHM13v2.0

LOC100969872
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	58,504,426 - 58,511,227 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	54,374,455 - 54,381,255 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	43,596,144 - 43,602,998 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	44,882,495 - 44,888,013 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	44,882,495 - 44,888,013 (+)	Ensembl			panPan2	panpan1.1

LOC103221445
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	28,163,039 - 28,165,399 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666044	44,055,994 - 44,061,328 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in LINC03040
219 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021100037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000055	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CR956410	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_021100037 ⟹ XP_020955696

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	7	38,993,441 - 39,002,331 (+)	NCBI

Sequence:

show sequence

ATGGGGTGCAAAGCCCTGCATCCCCCAGACTACATCCCCCAGCTCCCTGCAGCCCCAGGGCTCC
TCTGCTTCAGCCACAGGCTCCAGGGGCTTCGAGAAATGGCCAATGGTGTATATGTGAGCCCACG
GGGCTACAAGCATGCATGGGTGCCTGTGTGCAGATGGGCGGTGCTGGCTGACTCACCCGCTCCG
GAGCTGGAAGCCAGGACGCAGCTACTCAGCTACCTGTTGAGCCTGTCAGGTAGGGGCGGGGCAG
CCAGCCAGCCCCTCCCAGGCCCCGCCCCCAGGCCAATCCAGAGCAGCCCCCAATCACCCCTAAC
GCCTGCCCAGCGGAGCCCCAGGAAGTGGAAGAAGCCAGCGGTGAGCACATGGCCAGATGCCTCC
AATCTGAGGGAGGAGAGAGGACCCCTCCCCCGGCCCCCCCGACATGGAAATGCAGGTCTGTTGC
TTGTCTCTGGCAGAATTCAGGGGTCTCCGCCTCGAGCGTTGCATCTGCATCTTTCCGTCCACCT
GCGCGCAGAGAGCCCGCCACATGACTGCGTGCAGGGGACTGGACTCGAAGCCGGGAAAGAGCCG
CAGGGCCGAGGAGCGCCCCCTGGAGGCGGGACGGGGGCGCGGGCTACGCCCCCTCCCTGCCCCG
CCCTCCTCTGTCCGCGGAAGTGGGGACCAGCTGCGAGCAGCCCTGGGGCAGGTGACTCCGCGCC
CGCGCCCGGGAAAGGCGACGGGCGCCTCCCGCGGCAGGAGTCCCTTCTCCGCGGCCTCTACCGC
CCCCTGGGCTCTAGTCCCCACCTGGGCTTCTGAGAGTCTGACTCAACCGAGCCCGCATCGTTTC
ACCTCCTACAACACACCCGGAGCGTGCGGAGAAATTACAGGATTGCAGGGGCACGGCTAATGCG
CTCTAATTACCCACCGCCGCTCTCATCGGCGGCGCTGGGCCAACGTGCCGTAATTAGGCCGCCC
CTCCCCGGTCCCGGAACCTGTCCCCCGTCCCTTGTCCTTTGGTCAGTTCCGCCCGCCGCCACCT
CCTGCTGCCCTCCAGGATTGCCCCTTGGTCACAGGAGAGAGCCATGAGACCCAAACAAGGGTGA
GGAGCAGGAAGGTGCAGGACTTGGGGACCGGCCCCTCTCCTCCCTTAAGCCTACAGTTTTTGAG
ATCTCTGCTAGAAAGGACTAGGAGAGTGGGGAAGGCCATGAAGGACCCTTTGGTTGACAGGGAC
ATTGAGGCCGACTGGAAAGTTAACTGTGGGGGGCAGGGGTGGATAGGGCACCAGGGTGACAGGA
TCCCATTCTGCACATGAGGCTCAGAAAAGTAAAGGTTCTTGGGGGACGCCCCCAGCCGGAACTT
CCAGATTAGCTCATTTAAGGAGCCCAACATGCTCGCTCGCTCCCTGGAAGGGGAATTACCTTCC
CTCGAAGAAAGATGACATCCCCATGGCAAACATGGAGTCCTGGCAGCTGACCAACTGTGGCCAG
TTGGTCACAAGGGAGCTGGTGAGTGGCTCAAGTCCCCCATCCCAGGGAGGGTGGGACGAGGCCC
TGAAGACACAGGCCAGACCCAGTGGCCAGGACTAAAGGGGAGCAGCTTGGCTCTCAGGTTCTTT
ATTCAAACCAAGCTCAAACCTCTCCTATCAGACGTTCTTTCCTGAAGTCCAGGGGGGGTTGCAA
ATGCTTGGCCTTTGGCCAAGTTTAATCTTTAGTGAGGTTTTTGTTTGGCCTTCAGGGAGCATGT
GGTTTTTATATTCAATGTGAGAGCCCACGGATACTGCGGGCTGCCCTCCCGTCATCGGCAAAGG
CCGGTATGGCCAAACTAGGTCCCCAAAGGCATTTGAGTTTGAGACGTGATCTAGACCAGCCCAC
CTGACCTGCACTGTTATCTTTTCCCTCACCTTCTAGAAGCTCAGTCTGCTCTGTTGCACCTTTG
TAGTTTGTGTGTGTCGCTCAGTAGCTGTACCAAAGTGTTTCCCCGAGCTCCTCTTTAGGCTCCC
CAGATGTGGTGGCAGTGGTGGCTGCATATACTTCTGCGAACCCCTCTGGCACCCACTTTTTTCA
TCTTGAGAATCAAGCTGTGCCTTGGGTAGCCACCATATCTTTTCCAACAGGGATAACAGGTATT
TTTCCGCCGTAAGACTAGAGGTTCCTTGAGGGCAGGATATTGGATCTCTCCTTTCAGACTGGGT
TCTCACTGAGGGCTATGGCAGTGGGGTGTGGGGGTTGTATCATAGGTAGCTCCCTGAGAAGAGC
AGTGCCTCCCCCTCAGACTGGGGCTCCCTGAGGCAGGTCTGTGTCTTCCCTCCCCCCCATCAGA
CTGGGCTCCCTGAGGAGGGCCATGTCTCCCCTCAGACTGGGGCTCCCTAAGGGCAGAGCAGTGT
CTCCTCCCTCAGACTTGGGTCCCTGAGACAGGGCTGTGTCTCCCCCTCAGTCTGGAGCTCCTTG
AAGGCACTGGATTCTCCCCTCAGATGGAGCCTTTGCACCCCACCCCACCCCCCTGGCTCTCAGC
TGTGCCCAGGCGTTCCTCCCAGGACGCTGTCATGCTTTGATGAATGAAACCTACTAAGAATAAC
TCAG

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Protein Sequences


Protein RefSeqs	XP_020955696	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_020955696 ⟸ XM_021100037

- Sequence:

show sequence

MGCKALHPPDYIPQLPAAPGLLCFSHRLQGLREMANGVYVSPRGYKHAWVPVCRWAVLADSPAP
ELEARTQLLSYLLSLSGRGGAASQPLPGPAPRPIQSSPQSPLTPAQRSPRKWKKPAVSTWPDAS
NLREERGPLPRPPRHGNAGLLLVSGRIQGSPPRALHLHLSVHLRAESPPHDCVQGTGLEAGKEP
QGRGAPPGGGTGARATPPPCPALLCPRKWGPAASSPGAGDSAPAPGKGDGRLPRQESLLRGLYR
PLGSSPHLGFXESDSTEPASFHLLQHTRSVRRNYRIAGARLMRSNYPPPLSSAALGQRAVIRPP
LPGPGTCPPSLVLWSVPPAATSCCPPGLPLGHRREP

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Additional Information

External Database Links

Database	Acc Id	Source(s)
NCBI Gene	C7H6orf223	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-05-31	LINC03040	long intergenic non-protein coding RNA 3040	C7H6orf223	chromosome 7 C6orf223 homolog	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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