LSP1 (lymphocyte specific protein 1) - Rat Genome Database

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Gene: LSP1 (lymphocyte specific protein 1) Sus scrofa
Analyze
Symbol: LSP1
Name: lymphocyte specific protein 1
RGD ID: 14224944
Description: ENCODES a protein that exhibits actin binding (inferred); INVOLVED IN cellular response to interleukin-7 (ortholog); chemotaxis (ortholog); defense response (ortholog); ASSOCIATED WITH breast cancer (ortholog); Breast Neoplasms (ortholog); calcinosis (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: lymphocyte-specific protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl21,262,079 - 1,295,887 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.121,261,957 - 1,295,891 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:22301074  


Genomics

Comparative Map Data
LSP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl21,262,079 - 1,295,887 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.121,261,957 - 1,295,891 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
LSP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38111,853,084 - 1,892,263 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl111,850,904 - 1,892,267 (+)Ensemblhg38GRCh38
GRCh37111,874,314 - 1,913,493 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36111,830,776 - 1,870,069 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34111,830,882 - 1,870,068NCBI
Celera11333 - 5,385 (+)NCBICelera
Celera111,911,965 - 1,943,689 (+)NCBICelera
Cytogenetic Map11p15.5NCBI
HuRef111,665,106 - 1,704,058 (+)NCBIHuRef
CHM1_1111,873,026 - 1,912,407 (+)NCBICHM1_1
T2T-CHM13v2.0111,938,882 - 1,978,157 (+)NCBIT2T-CHM13v2.0
Lsp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397142,014,583 - 142,048,605 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7142,014,546 - 142,048,604 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm387142,458,223 - 142,494,868 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7142,460,809 - 142,494,867 (+)Ensemblmm10GRCm38
MGSCv377149,646,775 - 149,680,504 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv367142,281,233 - 142,303,989 (+)NCBIMGSCv36mm8
Celera7142,216,990 - 142,250,583 (+)NCBICelera
Cytogenetic Map7F5NCBI
cM Map787.93NCBI
Lsp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81207,044,157 - 207,077,891 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1207,044,159 - 207,077,893 (+)EnsemblGRCr8
mRatBN7.21197,614,677 - 197,648,414 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1197,614,687 - 197,648,416 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1205,987,391 - 206,021,123 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01213,073,261 - 213,106,982 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01205,747,412 - 205,781,135 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1206,443,771 - 206,477,511 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1211,347,462 - 211,381,177 (+)NCBILyon_Normotensive
Lyon_Hypertensive1208,079,726 - 208,113,467 (+)NCBILyon_Hypertensive
F344_StmMcwi1206,343,279 - 206,377,020 (+)NCBIF344_StmMcwi
Rnor_6.01215,628,750 - 215,662,505 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1215,628,785 - 215,662,504 (+)Ensemblrn6Rnor6.0
Rnor_5.01222,524,134 - 222,557,295 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41202,707,305 - 202,741,026 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1195,233,475 - 195,265,776 (+)NCBICelera
RGSC_v3.11202,867,020 - 202,901,488 (+)NCBI
Cytogenetic Map1q41NCBI
Lsp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542213,664,129 - 13,700,126 (+)Ensembl
ChiLan1.0NW_00495542213,664,594 - 13,697,682 (+)NCBIChiLan1.0ChiLan1.0
LSP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v294,275,003 - 4,316,280 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1113,485,759 - 3,527,683 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0111,889,625 - 1,931,192 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1111,921,905 - 1,963,192 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl111,921,905 - 1,963,192 (+)EnsemblpanPan2panpan1.1
LSP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11846,087,886 - 46,127,307 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1846,087,922 - 46,127,263 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1844,698,103 - 44,737,407 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01846,769,276 - 46,808,582 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1846,769,308 - 46,808,582 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11846,229,553 - 46,255,843 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01845,796,936 - 45,836,174 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01846,543,073 - 46,582,385 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Lsp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049471,497,865 - 1,532,878 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936816752,021 - 786,998 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LSP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111,672,916 - 1,713,160 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl11,672,695 - 1,715,502 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603898,869,425 - 98,909,619 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lsp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462476714,747,861 - 14,779,941 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Lsp1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v126,981,593 - 7,015,361 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in LSP1
366 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000052917   ⟹   ENSSSCP00000056290
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl21,272,737 - 1,295,675 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000059336   ⟹   ENSSSCP00000037459
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl21,262,081 - 1,295,887 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000066164   ⟹   ENSSSCP00000042722
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl21,262,079 - 1,295,677 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000078485   ⟹   ENSSSCP00000065121
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl21,262,080 - 1,295,677 (+)Ensembl
RefSeq Acc Id: XM_021082600   ⟹   XP_020938259
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.121,262,044 - 1,295,891 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021082602   ⟹   XP_020938261
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.121,275,742 - 1,295,891 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021082603   ⟹   XP_020938262
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.121,261,957 - 1,295,891 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021082604   ⟹   XP_020938263
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.121,272,585 - 1,295,891 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021082605   ⟹   XP_020938264
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.121,262,049 - 1,295,891 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020938262   ⟸   XM_021082603
- Peptide Label: isoform X3
- UniProtKB: A0A4X1U929 (UniProtKB/TrEMBL),   A0A0B8S055 (UniProtKB/TrEMBL),   A0A287A0K0 (UniProtKB/TrEMBL),   A0A8D0YE15 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020938259   ⟸   XM_021082600
- Peptide Label: isoform X1
- UniProtKB: A0A8D1QPX0 (UniProtKB/TrEMBL),   A0A8D1V1T0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020938264   ⟸   XM_021082605
- Peptide Label: isoform X5
- UniProtKB: A0A8D0YE15 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020938263   ⟸   XM_021082604
- Peptide Label: isoform X4
- UniProtKB: A0A287BI62 (UniProtKB/TrEMBL),   A0A8D1ZJ23 (UniProtKB/TrEMBL),   A0A8D1GTP0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020938261   ⟸   XM_021082602
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSSSCP00000065121   ⟸   ENSSSCT00000078485
Ensembl Acc Id: ENSSSCP00000037459   ⟸   ENSSSCT00000059336
Ensembl Acc Id: ENSSSCP00000056290   ⟸   ENSSSCT00000052917
Ensembl Acc Id: ENSSSCP00000042722   ⟸   ENSSSCT00000066164


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000031487 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015004571 UniProtKB/TrEMBL
  ENSSSCG00025045545 UniProtKB/TrEMBL
  ENSSSCG00030074892 UniProtKB/TrEMBL
  ENSSSCG00035024124 UniProtKB/TrEMBL
  ENSSSCG00040019533 UniProtKB/TrEMBL
  ENSSSCG00045004843 UniProtKB/TrEMBL
  ENSSSCG00055014221 UniProtKB/TrEMBL
  ENSSSCG00060031153 UniProtKB/TrEMBL
  ENSSSCG00065059303 UniProtKB/TrEMBL
  ENSSSCG00070016063 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000052917 ENTREZGENE
  ENSSSCT00000052917.3 UniProtKB/TrEMBL
  ENSSSCT00000059336 ENTREZGENE
  ENSSSCT00000059336.3 UniProtKB/TrEMBL
  ENSSSCT00000066164.3 UniProtKB/TrEMBL
  ENSSSCT00000078485.2 UniProtKB/TrEMBL
  ENSSSCT00015006134.1 UniProtKB/TrEMBL
  ENSSSCT00015006149.1 UniProtKB/TrEMBL
  ENSSSCT00015006152.1 UniProtKB/TrEMBL
  ENSSSCT00025061830.1 UniProtKB/TrEMBL
  ENSSSCT00025061979.1 UniProtKB/TrEMBL
  ENSSSCT00025062119.1 UniProtKB/TrEMBL
  ENSSSCT00025062260.1 UniProtKB/TrEMBL
  ENSSSCT00030105241.1 UniProtKB/TrEMBL
  ENSSSCT00035031678.1 UniProtKB/TrEMBL
  ENSSSCT00035031682.1 UniProtKB/TrEMBL
  ENSSSCT00035031689.1 UniProtKB/TrEMBL
  ENSSSCT00035031691.1 UniProtKB/TrEMBL
  ENSSSCT00035031695.1 UniProtKB/TrEMBL
  ENSSSCT00040026353.1 UniProtKB/TrEMBL
  ENSSSCT00040026368.1 UniProtKB/TrEMBL
  ENSSSCT00040026383.1 UniProtKB/TrEMBL
  ENSSSCT00040026396.1 UniProtKB/TrEMBL
  ENSSSCT00045007998.1 UniProtKB/TrEMBL
  ENSSSCT00045008003.1 UniProtKB/TrEMBL
  ENSSSCT00045008007.1 UniProtKB/TrEMBL
  ENSSSCT00045008010.1 UniProtKB/TrEMBL
  ENSSSCT00055028006.1 UniProtKB/TrEMBL
  ENSSSCT00055028066.1 UniProtKB/TrEMBL
  ENSSSCT00055028127.1 UniProtKB/TrEMBL
  ENSSSCT00055028186.1 UniProtKB/TrEMBL
  ENSSSCT00055028246.1 UniProtKB/TrEMBL
  ENSSSCT00060042131.1 UniProtKB/TrEMBL
  ENSSSCT00060042137.1 UniProtKB/TrEMBL
  ENSSSCT00060042138.1 UniProtKB/TrEMBL
  ENSSSCT00060042141.1 UniProtKB/TrEMBL
  ENSSSCT00065081165.1 UniProtKB/TrEMBL
  ENSSSCT00065081175.1 UniProtKB/TrEMBL
  ENSSSCT00065081181.1 UniProtKB/TrEMBL
  ENSSSCT00065081186.1 UniProtKB/TrEMBL
  ENSSSCT00070031540.1 UniProtKB/TrEMBL
  ENSSSCT00070031547.1 UniProtKB/TrEMBL
  ENSSSCT00070031552.1 UniProtKB/TrEMBL
InterPro Caldesmon_LSP UniProtKB/TrEMBL
  Lymphspecific UniProtKB/TrEMBL
NCBI Gene LSP1 ENTREZGENE
PANTHER LYMPHOCYTE-SPECIFIC PROTEIN 1 UniProtKB/TrEMBL
  PTHR18949 UniProtKB/TrEMBL
Pfam Caldesmon UniProtKB/TrEMBL
PRINTS LYMPHSPCIFIC UniProtKB/TrEMBL
UniProt A0A0B8S055 ENTREZGENE
  A0A287A0K0 ENTREZGENE, UniProtKB/TrEMBL
  A0A287AFG3_PIG UniProtKB/TrEMBL
  A0A287BI62 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1U929 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QJZ4_PIG UniProtKB/TrEMBL
  A0A8D0MGX1_PIG UniProtKB/TrEMBL
  A0A8D0S772_PIG UniProtKB/TrEMBL
  A0A8D0YE15 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0Z403_PIG UniProtKB/TrEMBL
  A0A8D1DTR2_PIG UniProtKB/TrEMBL
  A0A8D1GR88_PIG UniProtKB/TrEMBL
  A0A8D1GTP0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1KR34_PIG UniProtKB/TrEMBL
  A0A8D1QPX0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1V1T0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1ZJ23 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:89880 ENTREZGENE