PDRG1 (p53 and DNA damage regulated 1) - Rat Genome Database

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Pathways
Gene: PDRG1 (p53 and DNA damage regulated 1) Sus scrofa
Analyze
Symbol: PDRG1
Name: p53 and DNA damage regulated 1
RGD ID: 14096963
Description: ENCODES a protein that exhibits unfolded protein binding (inferred); INVOLVED IN protein folding (inferred); ASSOCIATED WITH Liver Neoplasms (ortholog); FOUND IN cytoplasm (inferred); prefoldin complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: p53 and DNA damage-regulated protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1735,608,804 - 35,616,066 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11735,608,805 - 35,616,067 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21740,543,097 - 40,550,708 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:22301074  


Genomics

Comparative Map Data
PDRG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1735,608,804 - 35,616,066 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11735,608,805 - 35,616,067 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21740,543,097 - 40,550,708 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PDRG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382031,944,337 - 31,952,046 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2031,944,337 - 31,952,069 (-)Ensemblhg38GRCh38
GRCh372030,532,140 - 30,539,849 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362029,996,419 - 30,003,544 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342029,996,418 - 30,003,544NCBI
Celera2027,289,114 - 27,296,239 (-)NCBICelera
Cytogenetic Map20q11.21NCBI
HuRef2027,321,525 - 27,328,650 (-)NCBIHuRef
CHM1_12030,436,707 - 30,443,832 (-)NCBICHM1_1
T2T-CHM13v2.02033,668,974 - 33,676,683 (-)NCBIT2T-CHM13v2.0
Pdrg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392152,850,810 - 152,857,939 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2152,850,810 - 152,857,347 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382153,008,890 - 153,016,019 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2153,008,890 - 153,015,427 (-)Ensemblmm10GRCm38
MGSCv372152,834,626 - 152,841,119 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362152,700,331 - 152,706,824 (-)NCBIMGSCv36mm8
Celera2158,838,164 - 158,844,668 (-)NCBICelera
Cytogenetic Map2H1NCBI
cM Map275.41NCBI
Pdrg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83161,937,812 - 161,943,981 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3161,937,815 - 161,948,995 (-)EnsemblGRCr8
mRatBN7.23141,477,561 - 141,483,730 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3141,477,585 - 141,483,750 (+)EnsemblmRatBN7.2
mRatBN7.2 Ensembl3141,476,501 - 141,483,858 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3145,382,525 - 145,388,694 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03153,966,339 - 153,972,508 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03151,705,708 - 151,711,879 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd3160,039,648 - 160,045,817 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive3167,009,462 - 167,015,631 (-)NCBILyon_Normotensive
Lyon_Hypertensive3158,869,320 - 158,875,489 (-)NCBILyon_Hypertensive
F344_StmMcwi3139,879,506 - 139,885,675 (-)NCBIF344_StmMcwi
Rnor_6.03148,487,056 - 148,493,225 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3148,487,059 - 148,493,225 (-)Ensemblrn6Rnor6.0
Rnor_5.03154,890,048 - 154,896,217 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43143,353,054 - 143,359,223 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3140,226,844 - 140,233,013 (-)NCBICelera
RGSC_v3.13143,258,676 - 143,264,845 (-)NCBI
Cytogenetic Map3q41NCBI
Pdrg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542229,052,295 - 29,059,727 (+)Ensembl
ChiLan1.0NW_00495542229,052,599 - 29,059,727 (+)NCBIChiLan1.0ChiLan1.0
PDRG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22137,643,311 - 37,666,885 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12037,636,409 - 37,659,955 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02028,240,139 - 28,263,693 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12029,369,412 - 29,376,507 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2029,369,412 - 29,376,507 (-)EnsemblpanPan2panpan1.1
PDRG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12421,381,216 - 21,387,326 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2421,381,636 - 21,387,282 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2421,028,364 - 21,034,485 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02422,068,013 - 22,074,139 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2422,062,837 - 22,074,117 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12421,346,624 - 21,352,743 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02421,451,468 - 21,457,584 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02421,882,380 - 21,888,502 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Pdrg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640170,451,688 - 170,458,151 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648518,882,334 - 18,889,549 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648518,883,052 - 18,889,499 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PDRG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1236,334,730 - 36,342,685 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl236,331,198 - 36,342,179 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605090,572,030 - 90,579,533 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pdrg1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624741575,798 - 581,236 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624741575,700 - 582,009 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Pdrg1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v15132,328,715 - 132,334,870 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in PDRG1
249 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000007918   ⟹   ENSSSCP00000007706
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1735,608,804 - 35,616,066 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000086866   ⟹   ENSSSCP00000073662
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1735,608,803 - 35,616,066 (-)Ensembl
RefSeq Acc Id: XM_003483933   ⟹   XP_003483981
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11735,608,805 - 35,616,067 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003483981   ⟸   XM_003483933
- UniProtKB: F1S528 (UniProtKB/TrEMBL),   A0A8D0XDX9 (UniProtKB/TrEMBL),   A0A8D1AX63 (UniProtKB/TrEMBL),   A0A8D1W6V6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000007706   ⟸   ENSSSCT00000007918
Ensembl Acc Id: ENSSSCP00000073662   ⟸   ENSSSCT00000086866


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000007237 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015065410 UniProtKB/TrEMBL
  ENSSSCG00025047817 UniProtKB/TrEMBL
  ENSSSCG00030053975 UniProtKB/TrEMBL
  ENSSSCG00035064434 UniProtKB/TrEMBL
  ENSSSCG00040012867 UniProtKB/TrEMBL
  ENSSSCG00045029151 UniProtKB/TrEMBL
  ENSSSCG00050074529 UniProtKB/TrEMBL
  ENSSSCG00055013853 UniProtKB/TrEMBL
  ENSSSCG00060059189 UniProtKB/TrEMBL
  ENSSSCG00065069541 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000007918 ENTREZGENE
  ENSSSCT00000007918.5 UniProtKB/TrEMBL
  ENSSSCT00015087577.1 UniProtKB/TrEMBL
  ENSSSCT00025064998.1 UniProtKB/TrEMBL
  ENSSSCT00025065070.1 UniProtKB/TrEMBL
  ENSSSCT00030075214.1 UniProtKB/TrEMBL
  ENSSSCT00030075244.1 UniProtKB/TrEMBL
  ENSSSCT00030075275.1 UniProtKB/TrEMBL
  ENSSSCT00035086717.1 UniProtKB/TrEMBL
  ENSSSCT00035086722.1 UniProtKB/TrEMBL
  ENSSSCT00040017044.1 UniProtKB/TrEMBL
  ENSSSCT00045049740.1 UniProtKB/TrEMBL
  ENSSSCT00050102029.1 UniProtKB/TrEMBL
  ENSSSCT00050102032.1 UniProtKB/TrEMBL
  ENSSSCT00055027266.1 UniProtKB/TrEMBL
  ENSSSCT00060080720.1 UniProtKB/TrEMBL
  ENSSSCT00065095476.1 UniProtKB/TrEMBL
  ENSSSCT00065095484.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.287.370 UniProtKB/TrEMBL
InterPro PDRG1 UniProtKB/TrEMBL
  PFD_beta-like UniProtKB/TrEMBL
  Prefoldin UniProtKB/TrEMBL
KEGG Report ssc:100738964 UniProtKB/TrEMBL
NCBI Gene PDRG1 ENTREZGENE
PANTHER P53 AND DNA DAMAGE-REGULATED PROTEIN 1 UniProtKB/TrEMBL
  PTHR21162 UniProtKB/TrEMBL
Pfam Prefoldin_2 UniProtKB/TrEMBL
Superfamily-SCOP Prefoldin UniProtKB/TrEMBL
UniProt A0A8D0S7Q1_PIG UniProtKB/TrEMBL
  A0A8D0XDX9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0XGA9_PIG UniProtKB/TrEMBL
  A0A8D0XGF6_PIG UniProtKB/TrEMBL
  A0A8D1ALG0_PIG UniProtKB/TrEMBL
  A0A8D1AX63 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1W6V6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1ZX25_PIG UniProtKB/TrEMBL
  F1S528 ENTREZGENE
UniProt Secondary F1S528 UniProtKB/TrEMBL
VGNC ID VGNC:95745 ENTREZGENE