LOC100624329 (zinc finger X-chromosomal protein) - Rat Genome Database

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Gene: LOC100624329 (zinc finger X-chromosomal protein) Sus scrofa
Analyze
Symbol: LOC100624329 (Ensembl: ZFY)
Name: zinc finger X-chromosomal protein (Ensembl:zinc finger protein Y-linked)
RGD ID: 14069631
Description: ENCODES a protein that exhibits DNA binding (inferred); metal ion binding (inferred); zinc ion binding (inferred); INVOLVED IN DNA-templated transcription (inferred); regulation of DNA-templated transcription (inferred); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Y-linked zinc finger protein; ZFY; zinc finger protein Y-linked
RGD Orthologs
Human
Bonobo
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblY9,874,794 - 9,935,353 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1Y9,874,048 - 9,935,356 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2Y1,324,739 - 1,385,953 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
LOC100624329
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblY9,874,794 - 9,935,353 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1Y9,874,048 - 9,935,356 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2Y1,324,739 - 1,385,953 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZFY
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38Y2,935,381 - 2,982,506 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblY2,935,281 - 2,982,512 (+)Ensemblhg38GRCh38
GRCh37Y2,803,422 - 2,850,547 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36Y2,863,546 - 2,909,891 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34Y2,846,906 - 2,893,252NCBI
CeleraX88,992,656 - 89,040,090 (+)NCBICelera
Cytogenetic MapYp11.2NCBI
HuRefY155,113 - 202,422 (+)NCBIHuRef
T2T-CHM13v2.0Y2,611,525 - 2,659,668 (+)NCBIT2T-CHM13v2.0
ZFY
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2Y44,194,482 - 44,244,809 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1Y2,681,616 - 2,732,517 (+)NCBINHGRI_mPanPan1
LOC119868751
(Canis lupus familiaris - dog)		 No map positions available.

Variants

.
Variants in LOC100624329
236 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
5 2 11 1 1 3 8 7 11 2 3 2

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_013991053 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013991057 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021080931 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021080932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021080933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021080934 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021080935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021080936 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021080937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021080938 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021080939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021080940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021080942 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021080943 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CU856619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU862077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FN252197 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FN252201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FO082423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ482072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ670201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  GFLN01123044 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSSCT00000013323   ⟹   ENSSSCP00000012966
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblY9,874,946 - 9,935,352 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000044303   ⟹   ENSSSCP00000047137
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblY9,874,889 - 9,935,339 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000045348   ⟹   ENSSSCP00000043420
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblY9,874,794 - 9,935,353 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000046322   ⟹   ENSSSCP00000032325
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblY9,910,949 - 9,935,352 (+)Ensembl
RefSeq Acc Id: XM_013991053   ⟹   XP_013846507
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1Y9,874,585 - 9,935,356 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013991057   ⟹   XP_013846511
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1Y9,874,048 - 9,935,356 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080931   ⟹   XP_020936590
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1Y9,874,561 - 9,935,356 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080932   ⟹   XP_020936591
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1Y9,877,270 - 9,935,356 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080933   ⟹   XP_020936592
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1Y9,877,270 - 9,935,356 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080934   ⟹   XP_020936593
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1Y9,874,585 - 9,935,356 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080935   ⟹   XP_020936594
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1Y9,874,585 - 9,935,356 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080936   ⟹   XP_020936595
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1Y9,874,049 - 9,935,356 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080937   ⟹   XP_020936596
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1Y9,907,994 - 9,935,356 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080938   ⟹   XP_020936597
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1Y9,875,032 - 9,935,356 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080939   ⟹   XP_020936598
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1Y9,874,585 - 9,935,356 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080940   ⟹   XP_020936599
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1Y9,910,950 - 9,935,356 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080942   ⟹   XP_020936601
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1Y9,877,270 - 9,935,356 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021080943   ⟹   XP_020936602
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1Y9,922,868 - 9,935,356 (+)NCBI
Sequence:
RefSeq Acc Id: XP_013846511   ⟸   XM_013991057
- Peptide Label: isoform X3
- UniProtKB: A0A4X1TC50 (UniProtKB/TrEMBL),   A0A8D1Q5Y6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020936595   ⟸   XM_021080936
- Peptide Label: isoform X1
- UniProtKB: A0A4X1TAU6 (UniProtKB/TrEMBL),   F1SPY3 (UniProtKB/TrEMBL),   A0A480S9J3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020936590   ⟸   XM_021080931
- Peptide Label: isoform X1
- UniProtKB: A0A4X1TAU6 (UniProtKB/TrEMBL),   F1SPY3 (UniProtKB/TrEMBL),   A0A480S9J3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020936593   ⟸   XM_021080934
- Peptide Label: isoform X1
- UniProtKB: A0A4X1TAU6 (UniProtKB/TrEMBL),   F1SPY3 (UniProtKB/TrEMBL),   A0A480S9J3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020936594   ⟸   XM_021080935
- Peptide Label: isoform X1
- UniProtKB: A0A4X1TAU6 (UniProtKB/TrEMBL),   F1SPY3 (UniProtKB/TrEMBL),   A0A480S9J3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020936598   ⟸   XM_021080939
- Peptide Label: isoform X2
- UniProtKB: A0A8D0QU37 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013846507   ⟸   XM_013991053
- Peptide Label: isoform X3
- UniProtKB: A0A4X1TC50 (UniProtKB/TrEMBL),   A0A8D1Q5Y6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020936597   ⟸   XM_021080938
- Peptide Label: isoform X1
- UniProtKB: A0A4X1TAU6 (UniProtKB/TrEMBL),   F1SPY3 (UniProtKB/TrEMBL),   A0A480S9J3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020936591   ⟸   XM_021080932
- Peptide Label: isoform X1
- UniProtKB: A0A4X1TAU6 (UniProtKB/TrEMBL),   F1SPY3 (UniProtKB/TrEMBL),   A0A480S9J3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020936592   ⟸   XM_021080933
- Peptide Label: isoform X1
- UniProtKB: A0A4X1TAU6 (UniProtKB/TrEMBL),   F1SPY3 (UniProtKB/TrEMBL),   A0A480S9J3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020936601   ⟸   XM_021080942
- Peptide Label: isoform X3
- UniProtKB: A0A4X1TC50 (UniProtKB/TrEMBL),   A0A8D1Q5Y6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020936596   ⟸   XM_021080937
- Peptide Label: isoform X1
- UniProtKB: A0A4X1TAU6 (UniProtKB/TrEMBL),   F1SPY3 (UniProtKB/TrEMBL),   A0A480S9J3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020936599   ⟸   XM_021080940
- Peptide Label: isoform X2
- UniProtKB: A0A8D0QU37 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020936602   ⟸   XM_021080943
- Peptide Label: isoform X4
- UniProtKB: A0A286ZLI3 (UniProtKB/TrEMBL),   A0A4X1TAD4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000047137   ⟸   ENSSSCT00000044303
Ensembl Acc Id: ENSSSCP00000043420   ⟸   ENSSSCT00000045348
Ensembl Acc Id: ENSSSCP00000012966   ⟸   ENSSSCT00000013323
Ensembl Acc Id: ENSSSCP00000032325   ⟸   ENSSSCT00000046322
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000012179 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025012647 UniProtKB/TrEMBL
  ENSSSCG00030008527 UniProtKB/TrEMBL
  ENSSSCG00040043018 UniProtKB/TrEMBL
  ENSSSCG00045017027 UniProtKB/TrEMBL
  ENSSSCG00050036196 UniProtKB/TrEMBL
  ENSSSCG00055009392 UniProtKB/TrEMBL
  ENSSSCG00060018856 UniProtKB/TrEMBL
  ENSSSCG00070007666 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000013323 ENTREZGENE
  ENSSSCT00000013323.4 UniProtKB/TrEMBL
  ENSSSCT00000045348 ENTREZGENE
  ENSSSCT00000045348.2 UniProtKB/TrEMBL
  ENSSSCT00000046322 ENTREZGENE
  ENSSSCT00000046322.2 UniProtKB/TrEMBL
  ENSSSCT00025016964.1 UniProtKB/TrEMBL
  ENSSSCT00030011690.1 UniProtKB/TrEMBL
  ENSSSCT00040057944.1 UniProtKB/TrEMBL
  ENSSSCT00045029166.1 UniProtKB/TrEMBL
  ENSSSCT00050048731.1 UniProtKB/TrEMBL
  ENSSSCT00055018325.1 UniProtKB/TrEMBL
  ENSSSCT00060025380.1 UniProtKB/TrEMBL
  ENSSSCT00070014821.1 UniProtKB/TrEMBL
  ENSSSCT00070014827.1 UniProtKB/TrEMBL
  ENSSSCT00070014838.1 UniProtKB/TrEMBL
  ENSSSCT00070014845.1 UniProtKB/TrEMBL
  ENSSSCT00070014860.1 UniProtKB/TrEMBL
  ENSSSCT00070014869.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Transcrp_activ_Zfx/Zfy-dom UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene LOC100624329 ENTREZGENE
PANTHER CHROMATIN-LINKED ADAPTOR FOR MSL PROTEINS, ISOFORM B-RELATED UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-H2C2_5 UniProtKB/TrEMBL
  Zfx_Zfy_act UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A286ZLI3 ENTREZGENE, UniProtKB/TrEMBL
  A0A287AHG0_PIG UniProtKB/TrEMBL
  A0A480S9J3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TAD4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TAU6 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TAX6_PIG UniProtKB/TrEMBL
  A0A4X1TC50 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0QU37 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1Q5Y6 ENTREZGENE, UniProtKB/TrEMBL
  F1SPY3 ENTREZGENE, UniProtKB/TrEMBL