SEC11A (SEC11 homolog A, signal peptidase complex subunit) - Rat Genome Database

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Pathways
Gene: SEC11A (SEC11 homolog A, signal peptidase complex subunit) Sus scrofa
Analyze
Symbol: SEC11A
Name: SEC11 homolog A, signal peptidase complex subunit
RGD ID: 14058428
Description: ENCODES a protein that exhibits hydrolase activity (inferred); peptidase activity (inferred); serine-type endopeptidase activity (inferred); INVOLVED IN obsolete signal peptide processing (inferred); proteolysis (inferred); ASSOCIATED WITH COVID-19 (ortholog); FOUND IN endoplasmic reticulum membrane (inferred); membrane (inferred); signal peptidase complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: signal peptidase complex catalytic subunit SEC11A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl752,829,305 - 52,875,623 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1752,829,267 - 52,872,008 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse:




Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:15679890   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SEC11A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl752,829,305 - 52,875,623 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1752,829,267 - 52,872,008 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
SEC11A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381584,669,544 - 84,716,139 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1584,669,529 - 84,716,460 (-)Ensemblhg38GRCh38
GRCh371585,212,775 - 85,259,370 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361583,013,779 - 83,060,678 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341583,013,780 - 83,060,678NCBI
Celera1561,638,279 - 61,685,260 (-)NCBICelera
Cytogenetic Map15q25.2-q25.3NCBI
HuRef1561,298,666 - 61,345,589 (-)NCBIHuRef
CHM1_11585,053,906 - 85,100,810 (-)NCBICHM1_1
T2T-CHM13v2.01582,421,945 - 82,500,674 (-)NCBIT2T-CHM13v2.0
Sec11a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39780,565,125 - 80,597,295 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl780,554,637 - 80,597,528 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38780,915,379 - 80,947,550 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl780,904,889 - 80,947,780 (-)Ensemblmm10GRCm38
MGSCv37788,060,265 - 88,092,436 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36780,788,892 - 80,821,063 (-)NCBIMGSCv36mm8
Celera778,323,962 - 78,356,116 (-)NCBICelera
Cytogenetic Map7D3NCBI
cM Map745.71NCBI
Sec11a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81144,290,680 - 144,318,658 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1144,284,497 - 144,324,009 (-)EnsemblGRCr8
mRatBN7.21134,881,448 - 134,909,427 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1134,875,265 - 134,915,069 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1142,796,317 - 142,824,273 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01149,965,735 - 149,993,690 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01142,878,912 - 142,906,883 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1143,286,427 - 143,314,637 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1148,223,436 - 148,251,645 (-)NCBILyon_Normotensive
Lyon_Hypertensive1144,888,885 - 144,916,840 (-)NCBILyon_Hypertensive
F344_StmMcwi1143,427,425 - 143,455,380 (-)NCBIF344_StmMcwi
Rnor_6.01142,733,423 - 142,759,999 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1142,733,434 - 142,759,882 (-)Ensemblrn6Rnor6.0
Rnor_5.01143,685,594 - 143,712,153 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41137,109,466 - 137,126,782 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1126,934,461 - 126,962,432 (-)NCBICelera
RGSC_v3.11137,187,873 - 137,205,188 (-)NCBI
Cytogenetic Map1q31NCBI
Sec11a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541614,421,988 - 14,459,233 (+)Ensembl
ChiLan1.0NW_00495541614,421,985 - 14,459,233 (+)NCBIChiLan1.0ChiLan1.0
SEC11A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21673,626,123 - 73,697,419 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11577,842,280 - 77,890,344 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01563,337,266 - 63,384,532 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11582,661,295 - 82,708,114 (-)NCBIPanPan1.1PanPan1.1panPan2
SEC11A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1353,940,644 - 53,980,422 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl353,940,844 - 53,980,387 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha356,580,382 - 56,619,870 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0354,360,595 - 54,400,438 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl354,359,348 - 54,400,371 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1353,879,143 - 53,918,622 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0354,088,443 - 54,128,157 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0354,429,989 - 54,469,531 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Sec11a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640129,569,703 - 129,609,839 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648316,724,562 - 16,764,565 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648316,724,674 - 16,764,586 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SEC11A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1293,645,234 - 3,690,510 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl293,669,621 - 3,690,615 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605943,370,823 - 43,416,887 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sec11a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476817,915,931 - 17,954,984 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476817,916,317 - 17,954,639 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Sec11a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12119,293,901 - 119,323,188 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in SEC11A
415 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000030797   ⟹   ENSSSCP00000022678
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl752,829,530 - 52,875,623 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000052419   ⟹   ENSSSCP00000058894
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl752,829,305 - 52,871,012 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000070866   ⟹   ENSSSCP00000067544
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl752,829,530 - 52,875,623 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000081338   ⟹   ENSSSCP00000065714
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl752,829,582 - 52,869,088 (+)Ensembl
RefSeq Acc Id: XM_021098904   ⟹   XP_020954563
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1752,829,267 - 52,872,008 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020954563   ⟸   XM_021098904
- UniProtKB: A0A5G2QTR1 (UniProtKB/TrEMBL),   A0A4X1UK39 (UniProtKB/TrEMBL),   A0A5G2R563 (UniProtKB/TrEMBL),   A0A8D1XJR3 (UniProtKB/TrEMBL),   A0A8D0UYI8 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000022678   ⟸   ENSSSCT00000030797
Ensembl Acc Id: ENSSSCP00000067544   ⟸   ENSSSCT00000070866
Ensembl Acc Id: ENSSSCP00000058894   ⟸   ENSSSCT00000052419
Ensembl Acc Id: ENSSSCP00000065714   ⟸   ENSSSCT00000081338

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000029183 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015078443 UniProtKB/TrEMBL
  ENSSSCG00025064883 UniProtKB/TrEMBL
  ENSSSCG00030067055 UniProtKB/TrEMBL
  ENSSSCG00035053461 UniProtKB/TrEMBL
  ENSSSCG00040003289 UniProtKB/TrEMBL
  ENSSSCG00045030493 UniProtKB/TrEMBL
  ENSSSCG00050062594 UniProtKB/TrEMBL
  ENSSSCG00055016367 UniProtKB/TrEMBL
  ENSSSCG00060044577 UniProtKB/TrEMBL
  ENSSSCG00065011146 UniProtKB/TrEMBL
  ENSSSCG00070017564 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000030797.3 UniProtKB/TrEMBL
  ENSSSCT00000052419.3 UniProtKB/TrEMBL
  ENSSSCT00000070866 ENTREZGENE
  ENSSSCT00000070866.1 UniProtKB/TrEMBL
  ENSSSCT00000081338.1 UniProtKB/TrEMBL
  ENSSSCT00015106201.1 UniProtKB/TrEMBL
  ENSSSCT00015106211.1 UniProtKB/TrEMBL
  ENSSSCT00025089091.1 UniProtKB/TrEMBL
  ENSSSCT00025089181.1 UniProtKB/TrEMBL
  ENSSSCT00030093724.1 UniProtKB/TrEMBL
  ENSSSCT00030093743.1 UniProtKB/TrEMBL
  ENSSSCT00030093772.1 UniProtKB/TrEMBL
  ENSSSCT00030093811.1 UniProtKB/TrEMBL
  ENSSSCT00035071330.1 UniProtKB/TrEMBL
  ENSSSCT00035071336.1 UniProtKB/TrEMBL
  ENSSSCT00040004122.1 UniProtKB/TrEMBL
  ENSSSCT00040004126.1 UniProtKB/TrEMBL
  ENSSSCT00040004143.1 UniProtKB/TrEMBL
  ENSSSCT00045052102.1 UniProtKB/TrEMBL
  ENSSSCT00045052203.1 UniProtKB/TrEMBL
  ENSSSCT00045052348.1 UniProtKB/TrEMBL
  ENSSSCT00050085263.1 UniProtKB/TrEMBL
  ENSSSCT00050085268.1 UniProtKB/TrEMBL
  ENSSSCT00050085275.1 UniProtKB/TrEMBL
  ENSSSCT00055032365.1 UniProtKB/TrEMBL
  ENSSSCT00055032413.1 UniProtKB/TrEMBL
  ENSSSCT00060060452.1 UniProtKB/TrEMBL
  ENSSSCT00060060457.1 UniProtKB/TrEMBL
  ENSSSCT00060060461.1 UniProtKB/TrEMBL
  ENSSSCT00065014828.1 UniProtKB/TrEMBL
  ENSSSCT00065014833.1 UniProtKB/TrEMBL
  ENSSSCT00065014840.1 UniProtKB/TrEMBL
  ENSSSCT00070034678.1 UniProtKB/TrEMBL
  ENSSSCT00070034680.1 UniProtKB/TrEMBL
  ENSSSCT00070034699.1 UniProtKB/TrEMBL
Gene3D-CATH Umud Fragment, subunit A UniProtKB/TrEMBL
InterPro LexA/Signal_pep-like_sf UniProtKB/TrEMBL
  Pept_S26A_signal_pept_1_CS UniProtKB/TrEMBL
  Pept_S26A_signal_pept_1_Ser-AS UniProtKB/TrEMBL
  Peptidase_S24_S26A/B/C UniProtKB/TrEMBL
  Peptidase_S26 UniProtKB/TrEMBL
  Peptidase_S26B UniProtKB/TrEMBL
NCBI Gene SEC11A ENTREZGENE
PANTHER PTHR10806 UniProtKB/TrEMBL
  PTHR10806:SF28 UniProtKB/TrEMBL
Pfam Peptidase_S24 UniProtKB/TrEMBL
PRINTS SIGNALPTASE UniProtKB/TrEMBL
PROSITE SPASE_I_1 UniProtKB/TrEMBL
  SPASE_I_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF51306 UniProtKB/TrEMBL
UniProt A0A4X1UK39 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UKS9_PIG UniProtKB/TrEMBL
  A0A4X1ULF9_PIG UniProtKB/TrEMBL
  A0A5G2QTR1 ENTREZGENE
  A0A5G2R563 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0LIQ8_PIG UniProtKB/TrEMBL
  A0A8D0UYI8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1A9R4_PIG UniProtKB/TrEMBL
  A0A8D1XJR3 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A287BRT7 UniProtKB/TrEMBL
  A0A5G2QTR1 UniProtKB/TrEMBL
  I3LF38 UniProtKB/TrEMBL