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Gene: SCAND1 (SCAN domain containing 1) Sus scrofa

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Symbol:

SCAND1

Name:

SCAN domain containing 1

RGD ID:

13986390

Description:

INVOLVED IN positive regulation of DNA-templated transcription (ortholog); FOUND IN nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

SCAN domain-containing protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SCAND1 (SCAN domain containing 1)	HGNC	EggNOG, Ensembl, NCBI, OMA, OrthoDB
Mus musculus (house mouse):	Scand1 (SCAN domain-containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Scand1 (SCAN domain-containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Scand1 (SCAN domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SCAND1 (SCAN domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SCAND1 (SCAN domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Scand1 (SCAN domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SCAND1 (SCAN domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Scand1 (SCAN domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Scand1 (SCAN domain containing 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	39,244,460 - 39,245,633 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	39,244,456 - 39,245,628 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	44,650,808 - 44,651,976 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of DNA-templated transcription (ISO)

Cellular Component

nucleus (IEA)

Molecular Function

protein binding (ISO)

References

Genomics

Comparative Map Data

SCAND1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	39,244,460 - 39,245,633 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	39,244,456 - 39,245,628 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	44,650,808 - 44,651,976 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SCAND1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	35,953,624 - 35,959,472 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	35,953,617 - 35,959,472 (-)	Ensembl			hg38	GRCh38
GRCh37	20	34,541,546 - 34,547,394 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	34,004,960 - 34,005,842 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	20	34,004,959 - 34,005,842	NCBI
Celera	20	31,289,831 - 31,290,713 (-)	NCBI		Celera
Cytogenetic Map	20	q11.23	NCBI
HuRef	20	31,319,340 - 31,321,082 (-)	NCBI		HuRef
CHM1_1	20	34,443,519 - 34,445,261 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	20	37,674,621 - 37,680,469 (-)	NCBI		T2T-CHM13v2.0

Scand1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	156,153,766 - 156,154,624 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	156,153,766 - 156,154,667 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	156,311,846 - 156,312,704 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	156,311,846 - 156,312,747 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	156,137,582 - 156,138,440 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	156,003,299 - 156,003,967 (-)	NCBI		MGSCv36	mm8
Celera	2	162,248,159 - 162,249,017 (-)	NCBI		Celera
Cytogenetic Map	2	H1	NCBI
cM Map	2	77.39	NCBI

Scand1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	165,278,723 - 165,279,587 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	165,278,723 - 165,279,587 (-)	Ensembl				GRCr8
mRatBN7.2	3	144,818,615 - 144,819,479 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	144,818,611 - 144,820,025 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	148,684,260 - 148,685,124 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	157,301,562 - 157,302,426 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	155,040,981 - 155,041,845 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	152,381,665 - 152,382,529 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	152,381,665 - 152,382,529 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	159,308,252 - 159,309,116 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	146,710,153 - 146,711,017 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	143,540,334 - 143,541,198 (-)	NCBI		Celera
RGSC_v3.1	3	146,616,064 - 146,621,863 (-)	NCBI
Cytogenetic Map	3	q42	NCBI

Scand1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955422	25,561,400 - 25,561,942 (+)	Ensembl
ChiLan1.0	NW_004955422	25,561,146 - 25,562,042 (+)	NCBI	ChiLan1.0	ChiLan1.0

SCAND1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	41,691,623 - 41,693,350 (-)	NCBI		NHGRI_mPanPan1-v2

SCAND1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	24,822,272 - 24,823,368 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	24,822,528 - 24,823,067 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	24,468,761 - 24,469,875 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	25,514,534 - 25,515,626 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	25,514,786 - 25,515,325 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	24,800,222 - 24,801,334 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	24,894,558 - 24,895,672 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	25,384,245 - 25,385,355 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Scand1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	173,795,040 - 173,795,967 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936561	4,953,874 - 4,954,401 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936561	4,953,653 - 4,954,636 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SCAND1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	56,813,371 - 56,814,367 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	56,813,492 - 56,814,328 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666087	3,297,669 - 3,298,684 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Scand1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624842	3,509,640 - 3,510,179 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624842	3,509,334 - 3,510,281 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Scand1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	135,661,055 - 135,661,917 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in SCAND1
17 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	4	23	3	2	5	14	12	23	3	6	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003134419	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000106	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK233420	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU633927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000008001 ⟹ ENSSSCP00000007787

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	17	39,244,460 - 39,245,633 (-)	Ensembl

RefSeq Acc Id:

XM_003134419 ⟹ XP_003134467

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	17	39,244,456 - 39,245,628 (-)	NCBI

Sequence:

show sequence

TCTCCTCCTCAGAGTCATCCTCCGACACCTCCTCGGGTTCCTTCCCCGCCTCCTCCTTCTCCTC
GAACTGGTGCTCGGAGGCGCCACCATCCCGAACTGACCATTGCACGCTTAGATTAGCCGGGTGC
CCTGCTGTGGCCGCCGCCTCCTGGCGGGACTCGCGAACGCGAGGGGGCGCCGCGTCCTCGAGCC
CAGACTCGGCTTCCGGGCGCTCGCGCACCGAGGTCATCATAGAGAAGCCAGCGGGGACGACCAC
TTCCGGCCGCCCCAGCCGCTTCGCCGGCGCTGGTAAGCTCACGGCGCCCCCCGCCCGCCTCCCT
CAGGGTCTCGCGGACTCCGCCCTCTAGCGGAAACGTCTCCCTCCTTACCCAGCCCCCGCGCAGA
CGTAGTGCCGCGCCCTCAGCTGCGGGACAAAGAGTGACGTCCGTAGCGGAGTTATGGCGGCCAC
CGAGCTGAGCTTGGCGGCTACCGGGAGTCTCGCGCTGCCGTTGGGGAAAGAAGAAGGGGCCGGC
CCGAGCTCAGGCCCGGAGCGTGACTCTGCGGACTCCTTCTCGACTCCTGAGGCCCCACCGCCTG
CCCCCAAGCCCTCCAGCCCCAAGGCCGAGGTCGCCGAAGAGAATCCTACGCCTCACTCGGCCGC
CTCCGCCTCCCTGGAGCTGCCCCTCGGGCCCGCAGCCCTGGGCTCCGCGTCGTTTGCCGAAGCA
GCTCCGCGCTCACCCCCAGGCCCTGGCGGTTCCCGGCCCGGCCCAGAGACGTTCCGCCAGCGAT
TCCGGCAGTTCCGCTACCAAGACGCGGCAGGCCCGCGGGAAGCGTTCCGGCAGCTGCGGGAGCT
TTCCCGCCAGTGGCTGCGGCCCGACATCCGCACGAAGGAGCAGATCGTGGAGATGCTGGTGCAA
GAGCAGCTGCTCGCCATCCTGCCCGAGGCGGCGCGGGCCCGGCGGCTTCGCCGCCGCACAGACG
TACGCATTACAGGCTGAGCAGCCGGGCTGCCGGCGGCCCGGCTCTCCATTCTGCGTTAATGAAA
AACGAGTTTTGGCTGTTCCTGCAGTCTCGAGTGTCCTTTTCGGTCGTCCTTTGCAATGTTTATT
TCCCCGAGCCTATTTCCAACCTTTCTGACTGGTGGCGAAATCAAGTTGGGAGCTCATGAGAATA
AAGCCTTTCTTATTCACTTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003134467	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000007787
	ENSSSCP00000007787.1
	ENSSSCP00015039279.1
	ENSSSCP00025019281.1
	ENSSSCP00030023214.1
	ENSSSCP00035009286.1
	ENSSSCP00040039636.1
	ENSSSCP00045013562.1
	ENSSSCP00050038117.1
	ENSSSCP00055049116.1
	ENSSSCP00060047499.1
	ENSSSCP00065034567.1
	ENSSSCP00070013271.1

RefSeq Acc Id:	XP_003134467 ⟸ XM_003134419
- UniProtKB:	F1S487 (UniProtKB/TrEMBL), A0A4X1TDC3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAATELSLAATGSLALPLGKEEGAGPSSGPERDSADSFSTPEAPPPAPKPSSPKAEVAEENPTP HSAASASLELPLGPAALGSASFAEAAPRSPPGPGGSRPGPETFRQRFRQFRYQDAAGPREAFRQ LRELSRQWLRPDIRTKEQIVEMLVQEQLLAILPEAARARRLRRRTDVRITG hide sequence

Ensembl Acc Id:

ENSSSCP00000007787 ⟸ ENSSSCT00000008001

Protein Domains

SCAN box

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000007312	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015071328	UniProtKB/TrEMBL
	ENSSSCG00025033255	UniProtKB/TrEMBL
	ENSSSCG00030036704	UniProtKB/TrEMBL
	ENSSSCG00035019094	UniProtKB/TrEMBL
	ENSSSCG00040066037	UniProtKB/TrEMBL
	ENSSSCG00045011681	UniProtKB/TrEMBL
	ENSSSCG00050065204	UniProtKB/TrEMBL
	ENSSSCG00055030701	UniProtKB/TrEMBL
	ENSSSCG00060077762	UniProtKB/TrEMBL
	ENSSSCG00065058093	UniProtKB/TrEMBL
	ENSSSCG00070008320	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000008001	ENTREZGENE
	ENSSSCT00000008001.4	UniProtKB/TrEMBL
	ENSSSCT00015095662.1	UniProtKB/TrEMBL
	ENSSSCT00025045235.1	UniProtKB/TrEMBL
	ENSSSCT00030051019.1	UniProtKB/TrEMBL
	ENSSSCT00035024697.1	UniProtKB/TrEMBL
	ENSSSCT00040090192.1	UniProtKB/TrEMBL
	ENSSSCT00045019778.1	UniProtKB/TrEMBL
	ENSSSCT00050088815.1	UniProtKB/TrEMBL
	ENSSSCT00055061237.1	UniProtKB/TrEMBL
	ENSSSCT00060107182.1	UniProtKB/TrEMBL
	ENSSSCT00065079484.1	UniProtKB/TrEMBL
	ENSSSCT00070016035.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.4020.10	UniProtKB/TrEMBL
InterPro	SCAN-C2H2_zinc_finger	UniProtKB/TrEMBL
	SCAN_dom	UniProtKB/TrEMBL
	SCAN_sf	UniProtKB/TrEMBL
KEGG Report	ssc:100157492	UniProtKB/TrEMBL
NCBI Gene	SCAND1	ENTREZGENE
PANTHER	PROTEIN ZBED8-RELATED	UniProtKB/TrEMBL
	SCAN DOMAIN-CONTAINING 1	UniProtKB/TrEMBL
Pfam	SCAN	UniProtKB/TrEMBL
PROSITE	SCAN_BOX	UniProtKB/TrEMBL
SMART	SCAN	UniProtKB/TrEMBL
Superfamily-SCOP	Retrovirus capsid dimerization domain-like	UniProtKB/TrEMBL
UniProt	A0A4X1TDC3	ENTREZGENE, UniProtKB/TrEMBL
	F1S487	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:104052	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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