LOC366772 (similar to immunoglobulin heavy chain) - Rat Genome Database

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Gene: LOC366772 (similar to immunoglobulin heavy chain) Rattus norvegicus
Analyze
Symbol: LOC366772
Name: similar to immunoglobulin heavy chain
RGD ID: 1359686
Description:
Type: gene
Previously known as: BWK3
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
RGSC_v3.46138,250,040 - 138,452,782 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.16143,139,888 - 143,140,338 (-)NCBI
Celera6129,860,614 - 130,053,435 (-)NCBICelera
Cytogenetic Map6q32NCBI


References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline

Genomics

Markers in Region
D6Wox11  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26132,340,793 - 132,340,886 (+)MAPPERmRatBN7.2
Rnor_6.06138,066,182 - 138,066,274NCBIRnor6.0
Rnor_5.06147,058,788 - 147,058,880UniSTSRnor5.0
RGSC_v3.46138,261,562 - 138,261,655RGDRGSC3.4
RGSC_v3.46138,261,563 - 138,261,655UniSTSRGSC3.4
RGSC_v3.16138,267,749 - 138,267,842RGD
Celera6129,872,137 - 129,872,229UniSTS
RH 3.4 Map6784.2UniSTS
RH 3.4 Map6784.2RGD
RH 2.0 Map61126.9RGD
Cytogenetic Map6q32UniSTS
D6Wox12  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26132,340,459 - 132,340,592 (+)MAPPERmRatBN7.2
Rnor_6.06138,065,848 - 138,065,980NCBIRnor6.0
Rnor_5.06147,058,454 - 147,058,586UniSTSRnor5.0
RGSC_v3.46138,261,228 - 138,261,361RGDRGSC3.4
RGSC_v3.46138,261,229 - 138,261,361UniSTSRGSC3.4
RGSC_v3.16138,267,415 - 138,267,548RGD
Celera6129,871,803 - 129,871,935UniSTS
RH 3.4 Map6783.79UniSTS
RH 3.4 Map6783.79RGD
RH 2.0 Map61129.0RGD
Cytogenetic Map6q32UniSTS
D6Arb2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26132,340,437 - 132,340,706 (+)MAPPERmRatBN7.2
Rnor_6.06138,065,826 - 138,066,094NCBIRnor6.0
Rnor_5.06147,058,432 - 147,058,700UniSTSRnor5.0
RGSC_v3.46138,261,206 - 138,261,475RGDRGSC3.4
RGSC_v3.46138,261,207 - 138,261,475UniSTSRGSC3.4
RGSC_v3.16138,267,393 - 138,267,662RGD
Celera6129,871,781 - 129,872,049UniSTS
RH 3.4 Map6782.8UniSTS
RH 3.4 Map6782.8RGD
RH 2.0 Map61127.8RGD
SHRSP x BN Map682.8898RGD
Cytogenetic Map6q32UniSTS
D6Arb3  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26132,339,579 - 132,339,866 (+)MAPPERmRatBN7.2
Rnor_6.06138,064,968 - 138,065,254NCBIRnor6.0
Rnor_5.06147,057,574 - 147,057,860UniSTSRnor5.0
RGSC_v3.46138,260,348 - 138,260,635RGDRGSC3.4
RGSC_v3.46138,260,349 - 138,260,635UniSTSRGSC3.4
RGSC_v3.16138,266,535 - 138,266,822RGD
Celera6129,870,923 - 129,871,209UniSTS
RH 3.4 Map6783.0UniSTS
RH 3.4 Map6783.0RGD
RH 2.0 Map61125.3RGD
SHRSP x BN Map683.0399RGD
Cytogenetic Map6q32UniSTS
RH134365  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26132,516,827 - 132,517,030 (+)MAPPERmRatBN7.2
Rnor_6.06138,239,343 - 138,239,545NCBIRnor6.0
Rnor_5.06147,231,799 - 147,232,001UniSTSRnor5.0
RGSC_v3.46138,442,358 - 138,442,560UniSTSRGSC3.4
Celera6130,043,266 - 130,043,468UniSTS
RH 3.4 Map8676.3UniSTS
Cytogenetic Map6q32UniSTS
Cytogenetic Map6q33UniSTS
Igh-Ia  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26132,329,476 - 132,329,656 (+)MAPPERmRatBN7.2
Rnor_6.06138,054,865 - 138,055,044NCBIRnor6.0
Rnor_5.06147,047,471 - 147,047,650UniSTSRnor5.0
RGSC_v3.46138,250,246 - 138,250,425UniSTSRGSC3.4
Celera6129,860,820 - 129,860,999UniSTS
Cytogenetic Map6q32UniSTS
RH127725  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26132,464,825 - 132,465,019 (+)MAPPERmRatBN7.2
mRatBN7.2647,904,641 - 47,904,835 (+)MAPPERmRatBN7.2
Rnor_6.0650,598,166 - 50,598,359NCBIRnor6.0
Rnor_6.06138,190,294 - 138,190,487NCBIRnor6.0
Rnor_5.0659,273,393 - 59,273,586UniSTSRnor5.0
Rnor_5.06147,182,750 - 147,182,943UniSTSRnor5.0
RGSC_v3.4649,185,154 - 49,185,347UniSTSRGSC3.4
RGSC_v3.46138,387,490 - 138,387,683UniSTSRGSC3.4
Celera647,106,650 - 47,106,843UniSTS
RH 3.4 Map6284.7UniSTS
Cytogenetic Map6q32UniSTS
Cytogenetic Map6q16UniSTS
RH127746  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26132,366,515 - 132,366,718 (+)MAPPERmRatBN7.2
Rnor_6.06138,092,086 - 138,092,288NCBIRnor6.0
Rnor_5.06147,084,692 - 147,084,894UniSTSRnor5.0
RGSC_v3.46138,287,188 - 138,287,390UniSTSRGSC3.4
Celera6129,897,845 - 129,898,047UniSTS
RH 3.4 Map6783.4UniSTS
Cytogenetic Map6q32UniSTS
AI326478  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26132,516,866 - 132,516,948 (+)MAPPERmRatBN7.2
Rnor_6.06138,239,382 - 138,239,463NCBIRnor6.0
Rnor_5.06147,231,838 - 147,231,919UniSTSRnor5.0
RGSC_v3.46138,442,397 - 138,442,478UniSTSRGSC3.4
Celera6130,043,305 - 130,043,386UniSTS
Cytogenetic Map6q32UniSTS
Cytogenetic Map6q33UniSTS
M-04725  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26132,526,630 - 132,526,738 (+)MAPPERmRatBN7.2
Rnor_6.06138,249,146 - 138,249,253NCBIRnor6.0
Rnor_5.06147,241,602 - 147,241,709UniSTSRnor5.0
RGSC_v3.46138,452,161 - 138,452,268UniSTSRGSC3.4
Celera6130,052,813 - 130,052,920UniSTS
Cytogenetic Map6q32UniSTS
Cytogenetic Map6q33UniSTS
RH137281  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26132,329,327 - 132,329,515 (+)MAPPERmRatBN7.2
Rnor_6.06138,054,716 - 138,054,903NCBIRnor6.0
Rnor_5.06147,047,322 - 147,047,509UniSTSRnor5.0
RGSC_v3.46138,250,097 - 138,250,284UniSTSRGSC3.4
Celera6129,860,671 - 129,860,858UniSTS
Cytogenetic Map6q32UniSTS
AA848883  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26132,424,751 - 132,424,917 (+)MAPPERmRatBN7.2
Rnor_6.06138,146,938 - 138,147,103NCBIRnor6.0
Rnor_5.06147,140,241 - 147,140,406UniSTSRnor5.0
RGSC_v3.46138,346,498 - 138,346,663UniSTSRGSC3.4
Celera6129,955,297 - 129,955,462UniSTS
RH 3.4 Map6781.2UniSTS
Cytogenetic Map6q32UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide AY158661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Protein Sequences
GenBank Protein AAO17784 (Get FASTA)   NCBI Sequence Viewer  
  EDL97386 (Get FASTA)   NCBI Sequence Viewer  
Protein Domains
Ig-like


Additional Information

Database Acc Id Source(s)
Gene3D-CATH Immunoglobulins UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig/MHC_CS UniProtKB/TrEMBL
  Ig_C1-set UniProtKB/TrEMBL
  Immune_Resp_Modulators UniProtKB/TrEMBL
  Immunoglobulin UniProtKB/TrEMBL
NCBI Gene 366772 ENTREZGENE
PANTHER IMMUNOGLOBULIN HEAVY CONSTANT ALPHA 1-RELATED UniProtKB/TrEMBL
  TAPASIN UniProtKB/TrEMBL
Pfam C1-set UniProtKB/TrEMBL
  PF00047 UniProtKB/TrEMBL
PhenoGen LOC366772 PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
  IG_MHC UniProtKB/TrEMBL
SMART IGc1 UniProtKB/TrEMBL
Superfamily-SCOP Immunoglobulin UniProtKB/TrEMBL
UniProt A6KBZ5_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-07-29 LOC366772  similar to immunoglobulin heavy chain      Symbol and Name status set to provisional 70820 PROVISIONAL