H2BL1 (H2B.L histone variant 1) - Rat Genome Database

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Gene: H2BL1 (H2B.L histone variant 1) Canis lupus familiaris
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Symbol: H2BL1
Name: H2B.L histone variant 1
RGD ID: 13246546
Description: ENCODES a protein that exhibits DNA binding (inferred); protein heterodimerization activity (inferred); structural constituent of chromatin (inferred); FOUND IN nucleosome (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: histone H2B subacrosomal variant-like; LOC111092555
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1255,701,975 - 55,702,518 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha252,669,869 - 52,670,414 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0256,218,136 - 56,218,678 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl256,218,250 - 56,218,609 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1253,278,158 - 53,278,703 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0254,046,508 - 54,047,050 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0254,937,413 - 54,937,955 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleosome  (IEA)
nucleus  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Variants

.
Variants in H2BL1
1 total Variants

Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCAFT00845000625   ⟹   ENSCAFP00845000437
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl256,218,250 - 56,218,609 (+)Ensembl
RefSeq Acc Id: XM_022410391   ⟹   XP_022266099
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1255,701,975 - 55,702,518 (+)NCBI
Dog10K_Boxer_Tasha252,669,869 - 52,670,414 (+)NCBI
Sequence:
RefSeq Acc Id: XM_038470009   ⟹   XP_038325937
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1253,278,158 - 53,278,703 (+)NCBI
RefSeq Acc Id: XM_038530811   ⟹   XP_038386739
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0254,937,413 - 54,937,955 (+)NCBI
RefSeq Acc Id: XM_038595032   ⟹   XP_038450960
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0254,046,508 - 54,047,050 (+)NCBI
RefSeq Acc Id: XM_038659111   ⟹   XP_038515039
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0256,218,136 - 56,218,678 (+)NCBI
RefSeq Acc Id: XP_022266099   ⟸   XM_022410391
- UniProtKB: A0A8C0L375 (UniProtKB/TrEMBL),   A0A8C0MCP6 (UniProtKB/TrEMBL),   A0A8I3MVD3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_038325937   ⟸   XM_038470009
RefSeq Acc Id: XP_038450960   ⟸   XM_038595032
RefSeq Acc Id: XP_038515039   ⟸   XM_038659111
- UniProtKB: A0A8C0L375 (UniProtKB/TrEMBL),   A0A8C0MCP6 (UniProtKB/TrEMBL),   A0A8I3MVD3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038386739   ⟸   XM_038530811
- UniProtKB: A0A8C0L375 (UniProtKB/TrEMBL),   A0A8C0MCP6 (UniProtKB/TrEMBL),   A0A8I3MVD3 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845000437   ⟸   ENSCAFT00845000625
Protein Domains
Histone H2A/H2B/H3


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000054527 UniProtKB/TrEMBL
  ENSCAFG00030005034 UniProtKB/TrEMBL
  ENSCAFG00040005800 UniProtKB/TrEMBL
  ENSCAFG00845000406 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000094120.1 UniProtKB/TrEMBL
  ENSCAFT00030009251.1 UniProtKB/TrEMBL
  ENSCAFT00040010854.1 UniProtKB/TrEMBL
  ENSCAFT00845000625 ENTREZGENE
  ENSCAFT00845000625.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.20.10 UniProtKB/TrEMBL
InterPro Histone-fold UniProtKB/TrEMBL
  Histone_H2A/H2B/H3 UniProtKB/TrEMBL
  Histone_H2B UniProtKB/TrEMBL
NCBI Gene LOC111092555 ENTREZGENE
PANTHER PTHR23428 UniProtKB/TrEMBL
Pfam Histone UniProtKB/TrEMBL
PRINTS HISTONEH2B UniProtKB/TrEMBL
SMART H2B UniProtKB/TrEMBL
Superfamily-SCOP SSF47113 UniProtKB/TrEMBL
UniProt A0A8C0L375 ENTREZGENE
  A0A8C0MCP6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MVD3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:83767 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-05 H2BL1  H2B.L histone variant 1  LOC111092555  histone H2B subacrosomal variant-like  Symbol and/or name change 5135510 APPROVED