Mon1b (MON1 homolog B, secretory trafficking associated) - Rat Genome Database

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Gene: Mon1b (MON1 homolog B, secretory trafficking associated) Rattus norvegicus
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Symbol: Mon1b
Name: MON1 homolog B, secretory trafficking associated
RGD ID: 1309977
Description: Predicted to be involved in early viral transcription and late viral transcription. Predicted to be located in cytoplasm. Predicted to be part of Mon1-Ccz1 complex. Orthologous to human MON1B (MON1 homolog B, secretory trafficking associated); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC307868; MON1 homolog b; MON1 homolog b (yeast); MON1 secretory trafficking family member B; RGD1309977; similar to hypothetical protein 5031407H10; vacuolar fusion protein MON1 homolog B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81958,526,503 - 58,534,478 (+)NCBIGRCr8
mRatBN7.21941,617,372 - 41,625,347 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1941,617,364 - 41,625,347 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1948,441,573 - 48,449,548 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01949,094,918 - 49,102,893 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01951,344,588 - 51,352,557 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01945,938,433 - 45,946,647 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1945,938,915 - 45,945,741 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01956,763,332 - 56,771,347 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41943,630,351 - 43,637,179 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11943,635,303 - 43,641,651 (+)NCBI
Celera1940,933,459 - 40,940,287 (+)NCBICelera
Cytogenetic Map19q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
Mon1-Ccz1 complex  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:21509660   PMID:29038162  


Genomics

Comparative Map Data
Mon1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81958,526,503 - 58,534,478 (+)NCBIGRCr8
mRatBN7.21941,617,372 - 41,625,347 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1941,617,364 - 41,625,347 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1948,441,573 - 48,449,548 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01949,094,918 - 49,102,893 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01951,344,588 - 51,352,557 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01945,938,433 - 45,946,647 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1945,938,915 - 45,945,741 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01956,763,332 - 56,771,347 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41943,630,351 - 43,637,179 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11943,635,303 - 43,641,651 (+)NCBI
Celera1940,933,459 - 40,940,287 (+)NCBICelera
Cytogenetic Map19q12NCBI
MON1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381677,191,190 - 77,202,398 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1677,190,835 - 77,202,398 (+)EnsemblGRCh38hg38GRCh38
GRCh371677,225,087 - 77,236,295 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361675,782,337 - 75,791,044 (+)NCBINCBI36Build 36hg18NCBI36
Celera1661,522,373 - 61,531,080 (+)NCBICelera
Cytogenetic Map16q23.1NCBI
HuRef1662,981,398 - 62,990,105 (+)NCBIHuRef
CHM1_11678,636,333 - 78,645,040 (+)NCBICHM1_1
T2T-CHM13v2.01683,247,364 - 83,258,572 (+)NCBIT2T-CHM13v2.0
Mon1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398114,362,218 - 114,371,824 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8114,362,219 - 114,371,811 (+)EnsemblGRCm39 Ensembl
GRCm388113,635,586 - 113,645,192 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8113,635,587 - 113,645,179 (+)EnsemblGRCm38mm10GRCm38
MGSCv378116,159,486 - 116,169,079 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368116,521,812 - 116,529,475 (+)NCBIMGSCv36mm8
Celera8117,844,250 - 117,853,879 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map859.65NCBI
Mon1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955522461,175 - 468,740 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955522459,961 - 470,543 (+)NCBIChiLan1.0ChiLan1.0
MON1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21886,907,992 - 86,917,740 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11692,827,659 - 92,840,051 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01657,765,901 - 57,774,639 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11677,112,159 - 77,120,937 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1677,112,238 - 77,120,937 (+)Ensemblpanpan1.1panPan2
MON1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1573,973,753 - 73,985,471 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl573,976,545 - 73,998,255 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha573,928,271 - 73,939,493 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0574,281,423 - 74,292,644 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl574,281,992 - 74,292,639 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1574,221,794 - 74,233,046 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0574,055,756 - 74,066,977 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0574,546,840 - 74,558,070 (-)NCBIUU_Cfam_GSD_1.0
Mon1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934933,947,909 - 33,961,010 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647525,628,251 - 25,635,877 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647525,628,093 - 25,641,205 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MON1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl610,713,719 - 10,725,457 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1610,713,721 - 10,725,474 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2610,722,454 - 10,731,840 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MON1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1562,674,678 - 62,685,195 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl562,677,115 - 62,688,261 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604713,368,620 - 13,377,908 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mon1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247469,732,277 - 9,744,110 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247469,734,409 - 9,744,087 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mon1b
27 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:72
Count of miRNA genes:62
Interacting mature miRNAs:70
Transcripts:ENSRNOT00000065508
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61350Bp32Blood pressure QTL 320.012arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)192048357557337602Rat
61447Tcas1Tongue tumor susceptibility QTL 16.08tongue integrity trait (VT:0010553)squamous cell carcinoma of the tongue maximum tumor diameter (CMO:0001875)19231612147316121Rat
724546Kidm3Kidney mass QTL 33.1kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)192932249057337602Rat
7411549Bw130Body weight QTL 13050.001body mass (VT:0001259)body weight gain (CMO:0000420)191545586057337602Rat
1358200Insglur2Insulin/glucose ratio QTL 24.1blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)193383821455283146Rat
1331737Uae29Urinary albumin excretion QTL 295.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19409615555283277Rat
724518Uae19Urinary albumin excretion QTL 195.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19745724942983518Rat
2298478Eau8Experimental allergic uveoretinitis QTL 80.0163uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)191715443357337602Rat
8694186Bw152Body weight QTL 1523.340.001body mass (VT:0001259)body weight gain (CMO:0000420)1956937445569374Rat
61423Cia14Collagen induced arthritis QTL 143joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)191082797043544039Rat
1578764Stresp19Stress response QTL 193.60.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)191563020157337602Rat
1331788Rf45Renal function QTL 452.818kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)191560502346559041Rat
2317848Alcrsp21Alcohol response QTL 211.8999999761581420.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)19320477748204777Rat
9589102Slep13Serum leptin concentration QTL 134.630.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)1956937445569374Rat
7247442Uae39Urinary albumin excretion QTL 39urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)19218792746708701Rat
724566Uae12Urinary albumin excretion QTL 125urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)19218792756457239Rat

Markers in Region
RH129790  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21941,625,173 - 41,625,332 (+)MAPPERmRatBN7.2
Rnor_6.01945,946,474 - 45,946,632NCBIRnor6.0
Rnor_5.01956,771,174 - 56,771,332UniSTSRnor5.0
RGSC_v3.41943,637,912 - 43,638,070UniSTSRGSC3.4
Celera1940,941,020 - 40,941,178UniSTS
RH 3.4 Map19545.0UniSTS
Cytogenetic Map19q12UniSTS
RH130613  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21941,625,020 - 41,625,204 (+)MAPPERmRatBN7.2
Rnor_6.01945,946,321 - 45,946,504NCBIRnor6.0
Rnor_5.01956,771,021 - 56,771,204UniSTSRnor5.0
RGSC_v3.41943,637,759 - 43,637,942UniSTSRGSC3.4
Celera1940,940,867 - 40,941,050UniSTS
RH 3.4 Map19544.6UniSTS
Cytogenetic Map19q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000065508   ⟹   ENSRNOP00000061560
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1941,617,613 - 41,624,441 (+)Ensembl
Rnor_6.0 Ensembl1945,938,915 - 45,945,741 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000098873   ⟹   ENSRNOP00000079817
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1941,617,364 - 41,625,347 (+)Ensembl
RefSeq Acc Id: NM_001399113   ⟹   NP_001386042
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81958,526,734 - 58,534,478 (+)NCBI
mRatBN7.21941,617,603 - 41,625,347 (+)NCBI
RefSeq Acc Id: NM_001399114   ⟹   NP_001386043
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81958,526,503 - 58,534,478 (+)NCBI
mRatBN7.21941,617,372 - 41,625,347 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001386042 (Get FASTA)   NCBI Sequence Viewer  
  NP_001386043 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL92609 (Get FASTA)   NCBI Sequence Viewer  
  EDL92610 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000061560.1
  ENSRNOP00000079817.1
Ensembl Acc Id: ENSRNOP00000061560   ⟸   ENSRNOT00000065508
Ensembl Acc Id: ENSRNOP00000079817   ⟸   ENSRNOT00000098873
RefSeq Acc Id: NP_001386043   ⟸   NM_001399114
- UniProtKB: A0A8I6G3S1 (UniProtKB/TrEMBL),   A6IZD1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001386042   ⟸   NM_001399113
- UniProtKB: A0A8I6G3S1 (UniProtKB/TrEMBL),   A6IZD1 (UniProtKB/TrEMBL)
Protein Domains
FUZ/MON1/HPS1 first Longin   FUZ/MON1/HPS1 second Longin   FUZ/MON1/HPS1 third Longin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A0L1-F1-model_v2 AlphaFold D4A0L1 1-438 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13701162
Promoter ID:EPDNEW_R11684
Type:initiation region
Name:Mon1b_1
Description:MON1 homolog B, secretory trafficking associated
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01945,938,910 - 45,938,970EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309977 AgrOrtholog
BioCyc Gene G2FUF-5604 BioCyc
Ensembl Genes ENSRNOG00000011552 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000065508.2 UniProtKB/TrEMBL
  ENSRNOT00000098873.1 UniProtKB/TrEMBL
InterPro FUZ/MON1/HPS1_longin_1 UniProtKB/TrEMBL
  FUZ/MON1/HPS1_longin_2 UniProtKB/TrEMBL
  FUZ/MON1/HPS1_longin_3 UniProtKB/TrEMBL
  Vacuolar_fusion_protein_MON1 UniProtKB/TrEMBL
NCBI Gene 307868 ENTREZGENE
PANTHER DUF254_SAND UniProtKB/TrEMBL
  VACUOLAR FUSION PROTEIN MON1 HOMOLOG B UniProtKB/TrEMBL
Pfam Fuz_longin_1 UniProtKB/TrEMBL
  Fuz_longin_2 UniProtKB/TrEMBL
  Fuz_longin_3 UniProtKB/TrEMBL
PhenoGen Mon1b PhenoGen
PRINTS YEAST73DUF UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011552 RatGTEx
UniProt A0A8I6G3S1 ENTREZGENE, UniProtKB/TrEMBL
  A6IZD1 ENTREZGENE, UniProtKB/TrEMBL
  D4A0L1_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-02 Mon1b  MON1 homolog B, secretory trafficking associated  Mon1b  MON1 secretory trafficking family member B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-11-19 Mon1b  MON1 secretory trafficking family member B  Mon1b  MON1 homolog b (yeast)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Mon1b  MON1 homolog b (yeast)   Mon1b_predicted  MON1 homolog b (yeast) (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Mon1b_predicted  MON1 homolog b (yeast) (predicted)  RGD1309977_predicted  similar to hypothetical protein 5031407H10 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1309977_predicted  similar to hypothetical protein 5031407H10 (predicted)  LOC307868_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC307868_predicted  similar to hypothetical protein 5031407H10 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL