Ralgdsl3 (ral guanine nucleotide dissociation stimulator like 3) - Rat Genome Database

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Gene: Ralgdsl3 (ral guanine nucleotide dissociation stimulator like 3) Rattus norvegicus
Analyze
Symbol: Ralgdsl3
Name: ral guanine nucleotide dissociation stimulator like 3
RGD ID: 1309756
Description: Predicted to enable guanyl-nucleotide exchange factor activity and small GTPase binding activity. Orthologous to human RGL3 (ral guanine nucleotide dissociation stimulator like 3); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine; 3-chloropropane-1,2-diol.
Type: protein-coding (Ensembl: pseudogene)
RefSeq Status: VALIDATED
Previously known as: LOC300444; ral guanine nucleotide dissociation stimulator-like 3; Rgl3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8828,775,187 - 28,796,765 (-)NCBIGRCr8
mRatBN7.2820,500,846 - 20,520,471 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl820,500,846 - 20,520,471 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx824,530,248 - 24,549,942 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0822,827,385 - 22,847,085 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0820,730,436 - 20,750,013 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0822,980,727 - 23,000,881 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl822,979,181 - 23,000,485 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0823,035,212 - 23,055,282 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4821,072,473 - 21,092,569 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1821,072,486 - 21,092,659 (-)NCBI
Celera821,891,406 - 21,910,979 (-)NCBICelera
Cytogenetic Map8q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10869344  


Genomics

Comparative Map Data
Ralgdsl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8828,775,187 - 28,796,765 (-)NCBIGRCr8
mRatBN7.2820,500,846 - 20,520,471 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl820,500,846 - 20,520,471 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx824,530,248 - 24,549,942 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0822,827,385 - 22,847,085 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0820,730,436 - 20,750,013 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0822,980,727 - 23,000,881 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl822,979,181 - 23,000,485 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0823,035,212 - 23,055,282 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4821,072,473 - 21,092,569 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1821,072,486 - 21,092,659 (-)NCBI
Celera821,891,406 - 21,910,979 (-)NCBICelera
Cytogenetic Map8q13NCBI
RGL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381911,394,060 - 11,419,314 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1911,384,341 - 11,419,328 (-)EnsemblGRCh38hg38GRCh38
GRCh371911,504,736 - 11,529,990 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361911,366,001 - 11,391,004 (-)NCBINCBI36Build 36hg18NCBI36
Celera1911,399,604 - 11,424,860 (-)NCBICelera
Cytogenetic Map19p13.2NCBI
HuRef1911,080,677 - 11,105,452 (-)NCBIHuRef
CHM1_11911,505,738 - 11,530,962 (-)NCBICHM1_1
T2T-CHM13v2.01911,521,038 - 11,546,286 (-)NCBIT2T-CHM13v2.0
Rgl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39921,882,475 - 21,900,765 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl921,880,007 - 21,900,742 (-)EnsemblGRCm39 Ensembl
GRCm38921,971,179 - 21,989,468 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl921,968,711 - 21,989,446 (-)EnsemblGRCm38mm10GRCm38
MGSCv37921,775,971 - 21,793,897 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36921,721,929 - 21,739,855 (-)NCBIMGSCv36mm8
Celera919,240,955 - 19,259,141 (-)NCBICelera
Cytogenetic Map9A3NCBI
cM Map97.96NCBI
Rgl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554952,305,053 - 2,316,841 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554952,304,820 - 2,319,171 (-)NCBIChiLan1.0ChiLan1.0
RGL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22016,305,568 - 16,333,233 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11915,307,114 - 15,332,659 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01910,932,016 - 10,966,701 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11911,652,354 - 11,674,443 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1911,652,700 - 11,685,293 (-)Ensemblpanpan1.1panPan2
RGL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12049,926,916 - 49,942,013 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2049,925,185 - 49,942,130 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2049,798,045 - 49,813,150 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02050,445,230 - 50,460,344 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2050,445,290 - 50,460,440 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12049,655,510 - 49,670,638 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02050,081,655 - 50,097,001 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02050,324,843 - 50,339,959 (+)NCBIUU_Cfam_GSD_1.0
Rgl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118208,863,481 - 208,877,061 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366591,478,805 - 1,491,085 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366591,477,645 - 1,491,170 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ODAD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl270,073,067 - 70,087,796 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1270,073,061 - 70,087,990 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2270,359,229 - 70,373,200 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RGL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1610,320,348 - 10,348,188 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660749,542,176 - 9,567,218 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rgl3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248283,194,473 - 3,206,239 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248283,192,885 - 3,207,617 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ralgdsl3
205 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:250
Count of miRNA genes:143
Interacting mature miRNAs:174
Transcripts:ENSRNOT00000017493
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558646Swd5Spike wave discharge measurement QTL 53.450.00036brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)81490675159906751Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
731182Uae24Urinary albumin excretion QTL 246.4urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)81933115293965294Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8470581049705810Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
631271Lecl1Lens clarity QTL 10.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)81898416884531599Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8470581049705810Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)8971222053356647Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8124597739Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)8768895552688955Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)8873663553736635Rat
2317882Alcrsp24Alcohol response QTL 243.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)8125902202Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8470581049705810Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat
61373Mcs4Mammary carcinoma susceptibility QTL 41.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)81629044461290444Rat

Markers in Region
RH132178  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2820,521,020 - 20,521,202 (+)MAPPERmRatBN7.2
Rnor_6.0823,001,035 - 23,001,216NCBIRnor6.0
Rnor_5.0823,055,819 - 23,056,000UniSTSRnor5.0
RGSC_v3.4821,093,119 - 21,093,300UniSTSRGSC3.4
Celera821,911,529 - 21,911,710UniSTS
RH 3.4 Map8180.8UniSTS
Cytogenetic Map8q13UniSTS
RH144336  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2820,500,419 - 20,500,598 (+)MAPPERmRatBN7.2
Rnor_6.0822,980,483 - 22,980,661NCBIRnor6.0
Rnor_5.0823,035,267 - 23,035,445UniSTSRnor5.0
RGSC_v3.4821,072,048 - 21,072,226UniSTSRGSC3.4
Celera821,890,981 - 21,891,159UniSTS
RH 3.4 Map8184.62UniSTS
Cytogenetic Map8q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 85 84 53 25 53 6 212 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001106805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001429151 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006242630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595529 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017595530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265062 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063265065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010053939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC128932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000017493   ⟹   ENSRNOP00000017493
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl820,500,846 - 20,520,471 (-)Ensembl
Rnor_6.0 Ensembl822,980,908 - 23,000,485 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000091027   ⟹   ENSRNOP00000074872
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl822,979,181 - 23,000,455 (-)Ensembl
RefSeq Acc Id: NM_001106805   ⟹   NP_001100275
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,776,909 - 28,796,482 (-)NCBI
mRatBN7.2820,500,846 - 20,520,471 (-)NCBI
Rnor_6.0822,980,908 - 23,000,485 (-)NCBI
Rnor_5.0823,035,212 - 23,055,282 (-)NCBI
RGSC_v3.4821,072,473 - 21,092,569 (-)RGD
Celera821,891,406 - 21,910,979 (-)RGD
Sequence:
RefSeq Acc Id: XM_063265058   ⟹   XP_063121128
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,777,385 - 28,796,765 (-)NCBI
RefSeq Acc Id: XM_063265059   ⟹   XP_063121129
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,777,384 - 28,796,765 (-)NCBI
RefSeq Acc Id: XM_063265060   ⟹   XP_063121130
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,777,384 - 28,796,765 (-)NCBI
RefSeq Acc Id: XM_063265061   ⟹   XP_063121131
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,775,187 - 28,796,765 (-)NCBI
RefSeq Acc Id: XM_063265062   ⟹   XP_063121132
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,775,187 - 28,796,765 (-)NCBI
RefSeq Acc Id: XM_063265063   ⟹   XP_063121133
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,777,385 - 28,796,765 (-)NCBI
RefSeq Acc Id: XM_063265064   ⟹   XP_063121134
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,777,384 - 28,796,489 (-)NCBI
RefSeq Acc Id: XM_063265065   ⟹   XP_063121135
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,781,942 - 28,796,765 (-)NCBI
RefSeq Acc Id: XR_010053939
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8828,781,948 - 28,796,765 (-)NCBI
RefSeq Acc Id: NP_001100275   ⟸   NM_001106805
- Sequence:
Ensembl Acc Id: ENSRNOP00000074872   ⟸   ENSRNOT00000091027
Ensembl Acc Id: ENSRNOP00000017493   ⟸   ENSRNOT00000017493
RefSeq Acc Id: XP_063121132   ⟸   XM_063265062
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063121131   ⟸   XM_063265061
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063121130   ⟸   XM_063265060
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063121129   ⟸   XM_063265059
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063121134   ⟸   XM_063265064
- Peptide Label: isoform X7
RefSeq Acc Id: XP_063121133   ⟸   XM_063265063
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063121128   ⟸   XM_063265058
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063121135   ⟸   XM_063265065
- Peptide Label: isoform X8
Protein Domains
N-terminal Ras-GEF   Ras-associating   Ras-GEF

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K961-F1-model_v2 AlphaFold A0A0G2K961 1-711 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695797
Promoter ID:EPDNEW_R6322
Type:multiple initiation site
Name:Rgl3_1
Description:ral guanine nucleotide dissociation stimulator-like 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0823,000,466 - 23,000,526EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309756 AgrOrtholog
BioCyc Gene G2FUF-31398 BioCyc
Ensembl Genes ENSRNOG00000013027 Ensembl
Gene3D-CATH Ras guanine-nucleotide exchange factors catalytic domain UniProtKB/TrEMBL
  Son of sevenless (SoS) protein Chain: S domain 1 UniProtKB/TrEMBL
InterPro RA_dom UniProtKB/TrEMBL
  Ras-like_GEF UniProtKB/TrEMBL
  Ras-like_Gua-exchang_fac_N UniProtKB/TrEMBL
  Ras_G-nucl-exch_fac_CS UniProtKB/TrEMBL
  Ras_GEF_dom_sf UniProtKB/TrEMBL
  RASGEF_cat_dom UniProtKB/TrEMBL
  RASGEF_cat_dom_sf UniProtKB/TrEMBL
  RGL3_RA UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
KEGG Report rno:300444 UniProtKB/TrEMBL
NCBI Gene 300444 ENTREZGENE
PANTHER GUANINE NUCLEOTIDE EXCHANGE FACTOR UniProtKB/TrEMBL
  RAL GUANINE NUCLEOTIDE DISSOCIATION STIMULATOR-LIKE 3 UniProtKB/TrEMBL
Pfam PF00788 UniProtKB/TrEMBL
  RasGEF UniProtKB/TrEMBL
  RasGEF_N UniProtKB/TrEMBL
PhenoGen Ralgdsl3 PhenoGen
PROSITE PS50200 UniProtKB/TrEMBL
  RASGEF UniProtKB/TrEMBL
  RASGEF_CAT UniProtKB/TrEMBL
  RASGEF_NTER UniProtKB/TrEMBL
RatGTEx ENSRNOG00000013027 RatGTEx
SMART RasGEF UniProtKB/TrEMBL
  RasGEFN UniProtKB/TrEMBL
  SM00314 UniProtKB/TrEMBL
Superfamily-SCOP Ras GEF UniProtKB/TrEMBL
  Ubiquitin-like UniProtKB/TrEMBL
UniProt A6JNW8 ENTREZGENE, UniProtKB/TrEMBL
  A6JNW9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-26 Ralgdsl3  ral guanine nucleotide dissociation stimulator like 3  Rgl3  ral guanine nucleotide dissociation stimulator like 3  Symbol changed 629549 APPROVED
2023-01-16 Rgl3  ral guanine nucleotide dissociation stimulator like 3  Rgl3  ral guanine nucleotide dissociation stimulator-like 3  Name changed 629549 APPROVED
2008-04-30 Rgl3  ral guanine nucleotide dissociation stimulator-like 3   Rgl3_predicted  ral guanine nucleotide dissociation stimulator-like 3 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Rgl3_predicted  ral guanine nucleotide dissociation stimulator-like 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED