Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Pyroxd1 | Rat | myofibrillar myopathy | | ISO | PYROXD1 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
|
Imported Disease Annotations - CTDObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Pyroxd1 | Rat | myofibrillar myopathy | | ISO | PYROXD1 (Homo sapiens) | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | | |
|
|
|
# | Reference Title | Reference Citation |
1. | GOA pipeline | RGD automated data pipeline |
2. | ClinVar Automated Import and Annotation Pipeline | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
3. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
4. | Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. | Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11. |
Pyroxd1 (Rattus norvegicus - Norway rat) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
PYROXD1 (Homo sapiens - human) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Pyroxd1 (Mus musculus - house mouse) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Pyroxd1 (Chinchilla lanigera - long-tailed chinchilla) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
PYROXD1 (Pan paniscus - bonobo/pygmy chimpanzee) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
PYROXD1 (Canis lupus familiaris - dog) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Pyroxd1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
PYROXD1 (Sus scrofa - pig) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
PYROXD1 (Chlorocebus sabaeus - green monkey) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Pyroxd1 (Heterocephalus glaber - naked mole-rat) |
|
.
Variants in Pyroxd1
32 total Variants |
The detailed report is available here: | Full Report | CSV | TAB | Printer | ||||
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | Full Report | CSV | TAB | Printer | Gviewer |
RH130945 |
|
alimentary part of gastrointestinal system
|
appendage
|
circulatory system
|
ectoderm
|
endocrine system
|
endoderm
|
exocrine system
|
hemolymphoid system
|
hepatobiliary system
|
integumental system
|
mesenchyme
|
mesoderm
|
nervous system
|
renal system
|
reproductive system
|
respiratory system
|
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
9 | 11 | 49 | 113 | 91 | 90 | 59 | 25 | 59 | 6 | 218 | 97 | 93 | 45 | 60 | 31 |
RefSeq Transcripts | NM_001004234 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
XM_017592597 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039107464 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_039107465 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XR_005503206 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC134270 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
BC079377 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH473964 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000004 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Ensembl Acc Id: | ENSRNOT00000016794 ⟹ ENSRNOP00000016794 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
Ensembl Acc Id: | ENSRNOT00000113178 ⟹ ENSRNOP00000083610 | ||||||||
Type: | CODING | ||||||||
Position: |
|
RefSeq Acc Id: | NM_001004234 ⟹ NP_001004234 | ||||||||||||||||||||||||||||
RefSeq Status: | PROVISIONAL | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
|
||||||||||||||||||||||||||||
Sequence: |
RefSeq Acc Id: | XM_017592597 ⟹ XP_017448086 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
|
||||||||||||||||
Sequence: |
RefSeq Acc Id: | XM_039107464 ⟹ XP_038963392 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | XM_039107465 ⟹ XP_038963393 | ||||||||||||
Type: | CODING | ||||||||||||
Position: |
|
RefSeq Acc Id: | XR_005503206 | ||||||||||||
Type: | NON-CODING | ||||||||||||
Position: |
|
Protein RefSeqs | NP_001004234 | (Get FASTA) | NCBI Sequence Viewer |
XP_017448086 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038963392 | (Get FASTA) | NCBI Sequence Viewer | |
XP_038963393 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAH79377 | (Get FASTA) | NCBI Sequence Viewer |
EDM01504 | (Get FASTA) | NCBI Sequence Viewer | |
EDM01505 | (Get FASTA) | NCBI Sequence Viewer | |
EDM01506 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000016794.3 | ||
ENSRNOP00000083610.1 | |||
GenBank Protein | Q68FS6 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_001004234 ⟸ NM_001004234 |
- UniProtKB: | Q68FS6 (UniProtKB/Swiss-Prot), F1LR31 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | XP_017448086 ⟸ XM_017592597 |
- Peptide Label: | isoform X1 |
- UniProtKB: | A0A8I5ZZN9 (UniProtKB/TrEMBL) |
- Sequence: |
Ensembl Acc Id: | ENSRNOP00000016794 ⟸ ENSRNOT00000016794 |
RefSeq Acc Id: | XP_038963392 ⟸ XM_039107464 |
- Peptide Label: | isoform X2 |
- UniProtKB: | F1LR31 (UniProtKB/TrEMBL) |
RefSeq Acc Id: | XP_038963393 ⟸ XM_039107465 |
- Peptide Label: | isoform X3 |
Ensembl Acc Id: | ENSRNOP00000083610 ⟸ ENSRNOT00000113178 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q68FS6-F1-model_v2 | AlphaFold | Q68FS6 | 1-498 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13693485 | ||||||||
Promoter ID: | EPDNEW_R4009 | ||||||||
Type: | initiation region | ||||||||
Name: | Pyroxd1_1 | ||||||||
Description: | pyridine nucleotide-disulphide oxidoreductase domain 1 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
|
Database | Acc Id | Source(s) |
AGR Gene | RGD:1303253 | AgrOrtholog |
BioCyc Gene | G2FUF-42496 | BioCyc |
Ensembl Genes | ENSRNOG00000012472 | Ensembl, UniProtKB/TrEMBL |
Ensembl Transcript | ENSRNOT00000016794.6 | UniProtKB/TrEMBL |
ENSRNOT00000113178.1 | UniProtKB/TrEMBL | |
Gene3D-CATH | 3.30.390.30 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
3.50.50.60 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
IMAGE_CLONE | IMAGE:7110714 | IMAGE-MGC_LOAD |
InterPro | FAD-dep_Oxidoreductase | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
FAD/NAD-bd_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
FAD/NAD-binding_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
FAD/NAD-linked_Rdtase_dimer_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Rubredoxin_C | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
KEGG Report | rno:297708 | UniProtKB/Swiss-Prot |
MGC_CLONE | MGC:94881 | IMAGE-MGC_LOAD |
NCBI Gene | 297708 | ENTREZGENE |
PANTHER | PYRIDINE NUCLEOTIDE-DISULFIDE OXIDOREDUCTASE DOMAIN-CONTAINING | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
PYRIDINE NUCLEOTIDE-DISULFIDE OXIDOREDUCTASE DOMAIN-CONTAINING PROTEIN 1 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
Pfam | Pyr_redox_2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
Rubredoxin_C | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
PhenoGen | Pyroxd1 | PhenoGen |
PRINTS | FADPNR | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
RatGTEx | ENSRNOG00000012472 | RatGTEx |
Superfamily-SCOP | SSF51905 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
UniProt | A0A8I5ZZN9 | ENTREZGENE, UniProtKB/TrEMBL |
F1LR31 | ENTREZGENE, UniProtKB/TrEMBL | |
PYRD1_RAT | UniProtKB/Swiss-Prot, ENTREZGENE |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
---|---|---|---|---|---|---|---|
2008-03-06 | Pyroxd1 | pyridine nucleotide-disulphide oxidoreductase domain 1 | MGC94881 | similar to Recql protein | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2005-09-30 | MGC94881 | Symbol and Name status set to provisional | 70820 | PROVISIONAL |