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Gene: Mrps18c (mitochondrial ribosomal protein S18C) Ictidomys tridecemlineatus

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Symbol:

Mrps18c

Name:

mitochondrial ribosomal protein S18C

RGD ID:

12682351

Description:

ENCODES a protein that exhibits small ribosomal subunit rRNA binding (inferred); structural constituent of ribosome (inferred); INVOLVED IN mitochondrial translation (inferred); translation (inferred); FOUND IN mitochondrial inner membrane (inferred); mitochondrial small ribosomal subunit (inferred); mitochondrion (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

28S ribosomal protein S18c, mitochondrial; mitochondrial ribosomal protein S18C, transcript variant X1; mitochondrial ribosomal protein S18C, transcript variant X2; small ribosomal subunit protein bS18m

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	5,033,401 - 5,062,174 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936738	1,216,237 - 1,224,009 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936738	1,219,210 - 1,223,991 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mitochondrial translation (IEA)

translation (IEA)

Cellular Component

mitochondrial inner membrane (IEA)

mitochondrial small ribosomal subunit (IEA)

mitochondrion (IEA)

ribonucleoprotein complex (IEA)

ribosome (IEA)

Molecular Function

small ribosomal subunit rRNA binding (IEA)

structural constituent of ribosome (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Mrps18c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	5,033,401 - 5,062,174 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936738	1,216,237 - 1,224,009 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936738	1,219,210 - 1,223,991 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MRPS18C
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	83,456,058 - 83,462,298 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	83,455,932 - 83,470,428 (+)	Ensembl			hg38	GRCh38
GRCh37	4	84,377,211 - 84,383,451 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	84,596,196 - 84,601,900 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	4	84,734,350 - 84,740,055	NCBI
Celera	4	81,667,571 - 81,673,381 (+)	NCBI		Celera
Cytogenetic Map	4	q21.23	NCBI
HuRef	4	80,119,893 - 80,125,705 (+)	NCBI		HuRef
CHM1_1	4	84,353,692 - 84,359,503 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	86,786,125 - 86,792,364 (+)	NCBI		T2T-CHM13v2.0

Mrps18c
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	100,946,625 - 100,952,333 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	100,946,493 - 100,952,337 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	100,798,759 - 100,804,467 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	100,798,627 - 100,804,471 (+)	Ensembl			mm10	GRCm38
MGSCv37	5	101,227,778 - 101,233,486 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	101,039,061 - 101,044,769 (+)	NCBI		MGSCv36	mm8
Celera	5	98,126,835 - 98,132,542 (+)	NCBI		Celera
Cytogenetic Map	5	E4	NCBI
cM Map	5	48.52	NCBI

Mrps18c
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	9,116,688 - 9,122,943 (-)	NCBI	GRCr8	GRCr8		GRCr8
mRatBN7.2	14	8,812,301 - 8,818,538 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	8,791,330 - 8,818,516 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	14	8,780,210 - 8,786,437 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	10,080,058 - 10,086,285 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	8,776,671 - 8,782,898 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	14	8,790,697 - 8,796,924 (-)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	14	8,778,168 - 8,784,407 (-)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	14	8,777,312 - 8,783,551 (-)	NCBI		Lyon_Hypertensive
F344_StmMcwi	14	9,054,604 - 9,060,846 (-)	NCBI		F344_StmMcwi
Rnor_6.0	14	10,440,691 - 10,446,909 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	10,440,691 - 10,446,909 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	14	10,388,657 - 10,394,875 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	14	10,096,209 - 10,102,427 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	14	8,921,339 - 8,927,557 (-)	NCBI		Celera
RGSC_v3.1	14	10,096,518 - 10,102,420 (-)	NCBI
Cytogenetic Map	14	p22	NCBI

Mrps18c
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955474	6,274,761 - 6,280,820 (-)	Ensembl
ChiLan1.0	NW_004955474	6,274,545 - 6,280,871 (-)	NCBI	ChiLan1.0	ChiLan1.0

MRPS18C
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	46,587,778 - 46,607,621 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	46,777,156 - 46,796,992 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	40,734,852 - 40,740,333 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	46,580,220 - 46,586,823 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	46,580,225 - 46,586,823 (-)	Ensembl			panPan2	panpan1.1

MRPS18C
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	32	7,290,554 - 7,295,342 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	32	7,290,584 - 7,298,989 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	32	34,590,214 - 34,595,093 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	32	7,312,132 - 7,316,849 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	32	7,312,119 - 7,316,849 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	32	7,382,322 - 7,387,107 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	32	7,251,787 - 7,256,576 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	32	32,705,130 - 32,710,013 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

MRPS18C
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	135,015,413 - 135,026,064 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	8	135,019,702 - 135,026,719 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	144,316,519 - 144,322,536 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MRPS18C
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	31,847,043 - 31,852,309 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666037	10,442,566 - 10,448,041 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mrps18c
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624900	419,835 - 426,886 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Mrps18c
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	11	11,022,860 - 11,028,879 (+)	NCBI		Rrattus_CSIRO_v1

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005339306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013364752	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040292209	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040292210	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040292212	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000344	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JBPVTT010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000007984 ⟹ ENSSTOP00000007146

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936738	1,216,237 - 1,224,009 (-)	Ensembl

RefSeq Acc Id:

XM_005339306 ⟹ XP_005339363

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405285	5,057,550 - 5,062,164 (-)	NCBI
SpeTri2.0	NW_004936738	1,219,210 - 1,223,991 (-)	NCBI

Sequence:

show sequence

TCCTCGAGTCCACAGGGAAGATTACCGGAAGGGACCTATTTGGAAGACTTGGAAAAAGGAAAGG
AAAAGGAATAACGAGGAACCATGGCAGCTGTGATTGCTTCTTGCGGTACTTTAGGGAAGAAGTT
GACACATTGGATAACGGCTACTGTCTGCCTCCCAAATCCCGGAACTCGCGCGGTGCTGTGGAGA
AGAGGTTGTTCACAATATAAACAGGGAACCAGCAATGAGGACCTGCCTGTTCCAATGGAAAATC
CTTATAAGGAGCCTCTTAAGAAATGTATCTTGTGTGAGAAACGTGTAGATTATAAAAATGTACA
GCTTCTGTCCCAATTTATTTCTCCATTTACTGGATGCATTTATGGAAGACATATAACAGGTCTT
TGTGGGAAGAAACAGAAAGAAATTACAAAAGCTATTAAGAGAGCTCAAATAATGGGGTTTATGC
CAGTTACATACAAGGATCCTGCATATCTCAAAGACCCTAAAGTTTGTAACATCAAATATCGGGA
ATAAATGATATAACGTTATTAACAATAAACTTATTTTATAATAAATTGACCTCTATTGACTCAA
ACTAACCTTTGCGAAGAAAAGTGTTTCAAGAGATCAGGAGTTGAAGCATCTCCTTTATATGACT
ATTCACAGAATAGGTTGCTTACTTAAAATGTTAATACTCATTAAATTAAATGGTACGTACCTTG
AATAAAAGTGGTCCTGTCTGATTGTCA

hide sequence

RefSeq Acc Id:

XM_013364752 ⟹ XP_013220206

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405285	5,057,751 - 5,062,171 (-)	NCBI
SpeTri2.0	NW_004936738	1,219,584 - 1,223,991 (-)	NCBI

Sequence:

show sequence

TCCTCGAGTCCACAGGGAAGATTACCGGAAGGGACCTATTTGGAAGACTTGGAAAAAGGAAAGG
AAAAGGAATAACGAGGAACCATGGCAGCTGTGATTGCTTCTTGCGGTACTTTAGGGAAGAAGTT
GACACATTGGATAACGGCTACTGTCTGCCTCCCAAATCCCGGAACTCGCGCGGTGCTGTGGAGA
AGAGGTTGTTCACAATATAAACAGGGAACCAGCAATGAGGACCTGCCTGTTCCAATGGAAAATC
CTTATAAGGAGCCTCTTAAGAAATGTATCTTGTGTGAGAAACGTGTAGATTATAAAAATGTACA
GGTCTTTGTGGGAAGAAACAGAAAGAAATTACAAAAGCTATTAAGAGAGCTCAAATAA

hide sequence

RefSeq Acc Id:

XM_040292209 ⟹ XP_040148143

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405285	5,035,486 - 5,062,174 (-)	NCBI

RefSeq Acc Id:

XM_040292210 ⟹ XP_040148144

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405285	5,033,401 - 5,062,172 (-)	NCBI

RefSeq Acc Id:

XM_040292212 ⟹ XP_040148146

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405285	5,057,400 - 5,062,167 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005339363	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000007146.2
	ENSSTOP00015003333
GenBank Protein	KAG3276328	(Get FASTA)	NCBI Sequence Viewer
	KAG3276329	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005339363 ⟸ XM_005339306
- Peptide Label:	isoform X3
- UniProtKB:	I3MAT1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAAVIASCGTLGKKLTHWITATVCLPNPGTRAVLWRRGCSQYKQGTSNEDLPVPMENPYKEPLK KCILCEKRVDYKNVQLLSQFISPFTGCIYGRHITGLCGKKQKEITKAIKRAQIMGFMPVTYKDP AYLKDPKVCNIKYRE hide sequence

RefSeq Acc Id:	XP_013220206 ⟸ XM_013364752
- Peptide Label:	isoform X5
- Sequence:	show sequence MAAVIASCGTLGKKLTHWITATVCLPNPGTRAVLWRRGCSQYKQGTSNEDLPVPMENPYKEPLK KCILCEKRVDYKNVQVFVGRNRKKLQKLLRELK hide sequence

RefSeq Acc Id:	XP_040148144 ⟸ XM_040292210
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_040148143 ⟸ XM_040292209
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_040148146 ⟸ XM_040292212
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSSTOP00000007146 ⟸ ENSSTOT00000007984

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000007989	Ensembl, UniProtKB/TrEMBL
	ENSSTOG00015002752	ENTREZGENE
Ensembl Transcript	ENSSTOT00000007984.3	UniProtKB/TrEMBL
Gene3D-CATH	4.10.640.10	UniProtKB/TrEMBL
InterPro	Ribosomal_S18	UniProtKB/TrEMBL
	Ribosomal_S18_CS	UniProtKB/TrEMBL
	Ribosomal_S18_sf	UniProtKB/TrEMBL
KEGG Report	iti:101968000	UniProtKB/TrEMBL
NCBI Gene	Mrps18c	ENTREZGENE
PANTHER	28S RIBOSOMAL PROTEIN S18C, MITOCHONDRIAL	UniProtKB/TrEMBL
	PTHR13479	UniProtKB/TrEMBL
Pfam	Ribosomal_S18	UniProtKB/TrEMBL
PROSITE	RIBOSOMAL_S18	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46911	UniProtKB/TrEMBL
UniProt	I3MAT1	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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