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Gene: Fam91a1 (family with sequence similarity 91 member A1) Ictidomys tridecemlineatus

Analyze

Symbol:

Fam91a1

Name:

family with sequence similarity 91 member A1

RGD ID:

12637110

Description:

INVOLVED IN intracellular protein transport (inferred); vesicle tethering to Golgi (inferred); FOUND IN cytoplasmic vesicle (inferred); trans-Golgi network (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

family with sequence similarity 91 member A1, transcript variant X1; family with sequence similarity 91 member A1, transcript variant X2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	16,218,923 - 16,258,745 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	23,644,858 - 23,684,872 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	23,645,233 - 23,684,841 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular protein transport (IEA)

vesicle tethering to Golgi (IEA)

Cellular Component

cytoplasmic vesicle (IEA)

trans-Golgi network (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

Fam91a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	16,218,923 - 16,258,745 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	23,644,858 - 23,684,872 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	23,645,233 - 23,684,841 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FAM91A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	123,768,439 - 123,815,452 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	123,768,439 - 123,815,452 (+)	Ensembl			hg38	GRCh38
GRCh37	8	124,780,679 - 124,827,692 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	124,850,063 - 124,896,873 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	8	120,968,947 - 121,015,229 (+)	NCBI		Celera
Cytogenetic Map	8	q24.13	NCBI
HuRef	8	120,107,371 - 120,154,391 (+)	NCBI		HuRef
CHM1_1	8	124,821,157 - 124,867,970 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	124,900,680 - 124,947,695 (+)	NCBI		T2T-CHM13v2.0

Fam91a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	15	58,277,868 - 58,329,655 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	15	58,287,317 - 58,329,589 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	15	58,405,907 - 58,457,801 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	15	58,415,468 - 58,457,740 (+)	Ensembl			mm10	GRCm38
MGSCv37	15	58,247,023 - 58,289,356 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	15	58,257,189 - 58,287,822 (+)	NCBI		MGSCv36	mm8
Celera	15	59,943,740 - 59,986,510 (+)	NCBI		Celera
Cytogenetic Map	15	D1	NCBI
cM Map	15	24.76	NCBI

Fam91a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	7	91,857,261 - 91,897,019 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	7	91,859,062 - 91,898,195 (+)	Ensembl				GRCr8
mRatBN7.2	7	89,969,558 - 90,007,546 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	7	89,969,605 - 90,007,556 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	7	91,852,199 - 91,890,391 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	7	94,053,469 - 94,091,662 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	7	93,877,563 - 93,915,502 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	7	93,921,421 - 93,959,360 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	7	94,812,043 - 94,850,186 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	7	94,949,143 - 94,987,286 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	7	93,403,858 - 93,441,796 (+)	NCBI		F344_StmMcwi
Rnor_6.0	7	98,302,803 - 98,341,201 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	7	98,302,953 - 98,342,367 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	7	98,904,335 - 98,942,732 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	7	95,156,793 - 95,194,731 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	7	86,737,368 - 86,775,231 (+)	NCBI		Celera
Cytogenetic Map	7	q33	NCBI

Fam91a1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955540	2,561,695 - 2,601,230 (+)	Ensembl
ChiLan1.0	NW_004955540	2,561,695 - 2,600,144 (+)	NCBI	ChiLan1.0	ChiLan1.0

FAM91A1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	141,044,467 - 141,247,764 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	116,555,642 - 116,758,987 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	120,463,599 - 120,510,937 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	123,218,674 - 123,265,837 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	123,218,674 - 123,265,838 (+)	Ensembl			panPan2	panpan1.1

FAM91A1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	22,036,518 - 22,082,278 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	22,036,776 - 22,076,751 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	22,002,255 - 22,045,005 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	22,378,286 - 22,421,246 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	22,378,380 - 22,421,298 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	22,104,943 - 22,147,679 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	22,208,904 - 22,251,868 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	22,450,958 - 22,493,714 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

FAM91A1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	15,640,290 - 15,681,826 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	15,640,286 - 15,681,826 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	16,359,647 - 16,401,026 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FAM91A1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	118,342,452 - 118,391,634 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	118,342,547 - 118,388,887 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666039	21,820,124 - 21,869,269 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fam91a1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624735	31,223,763 - 31,267,810 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624735	31,222,825 - 31,267,809 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Fam91a1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	232,962,945 - 233,002,000 (+)	NCBI		Rrattus_CSIRO_v1

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005316175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_013357225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040293686	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_078016729	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JBPVTT010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000001827 ⟹ ENSSTOP00000001631

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936470	23,644,858 - 23,684,872 (-)	Ensembl

RefSeq Acc Id:

XM_005316175 ⟹ XP_005316232

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	16,218,923 - 16,258,742 (-)	NCBI
SpeTri2.0	NW_004936470	23,645,233 - 23,684,841 (-)	NCBI

Sequence:

show sequence

AGAGCCATTTCCGGCGGGCAGAAACTAGGAAGAAACTTGGAGCCGCCAAGGCGCTCCAGCTACC
AATCGCCGCCGCCGCTGCTGTGCCCTGTGGCCCGGGCCGCGCTGAGCTGTCGGGAGGCCTGACC
ATGGGGCAGCGCGGGCCCACCGCAGTGTGAGGCGCGGAGCCTCCCGCGGGCTCCCCTGACAGGC
CGGGGACCGGCAGGCGGGAGGCGTCGTTCGGCCGCGGTCGCGGCTCCGGCCCGGGCATCATGAA
CATAGACGTGGAGTTCCACATCCGGCACAACTACCCCTGGAGCAAGTTGCCCGCCAACGTGAGA
CAGAGTCTTGGAAATTCACAGAGGGAATATGAAAAGCAGGTTGTCCTGTACAGTATCCGCAATC
AACTACGATACAGAAATAACTTAGTTAAACATGTCAAGAAAGATGAACGCAAATACTATGAGGA
GCTGCTAAAGTACAGTCGAGATCACCTCATGCTGTATCCTTACCACTTATCAGATATTATGGTG
AAGGGTCTGCGGATAACACCATTTTCCTACTATACTGGGATTATGGAGGACATTATGAACAGTG
AGAAAAGTTATGATTCATTGCCCAATTTTACTGCTGCTGACTGTCTGAGGCTTCTTGGCATAGG
AAGGAACCAGTATATTGATCTTATGAATCAGTGTAGATCATCAAAAAAATTCTTCAGAAGGAAA
ACGGCTCGTGATCTTCTGCCCATAAAGCCAGTAGAAATCACCATAGAGGCGTGGTGGGTAGTAC
AGTCTGGATATATCACAGAAGATGACATCAAGATATGCACTTTGCCTGAGAAATGCGCTATTGA
TAAGATCATCGATTCAGGCCCTCAACTCTCTGGATCACTAGATTACAATATAGTACATAGTTTA
TATAACAAAGGATTTATTTATCTGGATGTACCGATATCTGATGACAGTTGTATAGCAGTTCCTC
CTCTTGAAGGTTTTGTAATGAATCGAGTACAGGGTGATTATTTTGAAACTCTACTCTATAAAAT
ATTTGTTTCAATAGATGAGCACACTAATGTTGCAGAGCTTGCCAATGTCCTTGAGATAGACTTA
TCTCTGGTTAAGAATGCTGTTTCAATGTATTGCCGATTAGGCTTTGCCCATAAGAAGGGACAAG
TAATAAATTTGGATCAACTTCATTCATCGTGGAAGAATGTTCCATCCGTAAACAGATTAAAGAG
TACTTTAGATCCACAAAAGATGCTCTTATGGGATGGTGGGGAAAGTCGGAGTCCTGTGCAAGAA
GCTTCTTCGGCTACTGACACAGACACAAATAGTCAAGAAGATCCAGCTGACACAGCTAGTTTAA
GCAGTTTGAGTCTGTCTACAGGATATACGAAGCGTATTGCCTTCCTATTTGATTCAACTCTTAC
TGCCTTTTTAATGATGGGAAATCTTTCACCAAACTTGAAAAGTCATGCAGTCACAATGTTTGAA
GTAGGCAAACTCTCAGATGAATCTCTGGACAGCTTTCTTATAGAACTAGAAAAGGTTCAGAGCA
CTGGTGAAGGAGAAGCACAGAGATATTTTGATCATGCACTTACTCTGAGAAACACAATACTATT
TCTGAGACATAATAAAGACCTAGTTGCACAAACTGCTCAGCCAGACCAACCCAATTATGGTTTT
CCCTTGGATCTCTTACGCTGTGAAAGCCTCCTTGGTTTGGACCCTGCCACTTGCAGCAGAGTTC
TAAACAAAAATTATACACTGCTTGTTTCCATGGCTCCTCTCACCAATGAAATCCGGCCAATCAG
CAGCTGTACTCCTCAGCATATTGGACCAGCTATCCCAGAAGTCAGTTCTGTCTGGTTTAAACTG
TACATTTACTTTATCACTGGGCAAGGACCACCATCTCTCTTACTGTCCAAAGGTACAAGACTTC
GAAAACTCCCAGATATATTCCAGGGTTATGATCGATTACTCATAACATCTTGGGGTCACGATCC
TGGGGTAGTTCCTACATCAAATGTACTCACGATGTTGAATGATGCTTTAACACATTCTGCGGTT
TTAATTCAGGGACATGGTTTGCATGGGATAGGAGAAACTGTCCATATACCGTTTCCATTTGATG
AAACAGAACTGCAAGGAGAATTTACTCGTGTCAATATGGGTGTTCATAAAGCATTACAAATATT
AAGGAACAAAGTGGACTTGCAGCATTTCTGTGGATATATCACCATGTTGAATTCTTCTAGCCAA
CTTGCAAGTAGAAAACTCAGTGATGCTTCTGATGAGAGAGGAGATCCTGATTTGGCTTCTGGCT
CAGATGTAAATGGCAGTACAGAATCATTTGAAATGGTCATTGAGGAAGCAACTGTAGATTCAGC
AGTGAAACAAAACTCTGGTGCCACAACAGAAGCAGAGTGGGTTCCTCTTGAGTTGTGCTTTGGC
ATTCCACTGTTCAGTTCTGAATTAAACCGGAAAGTTTGTAAGAAAATTGCCACACATGGCCTCT
GTAGAAAAGAAAGCCTTCAAAATCTTTTGCATTCCAGTAGGAAACTCTCTCTACAAGTCCTTAA
CTTTGTTCACTCATTCCAGGAAGGTGCTTCAACACTGGATATTCACACAGAGCCCAATTTTTCA
AGTTTGCTTTCACCGTCATCCTATGTGGATATGGGAGTTCCACTTCCTGCAAAGAACTTAATAT
TTAAAGATGGCATCTTATCAGAATGGAGTGGACGGTCACCTTCCTCACTTCTTATTGCTAATCT
TCATTTGCAATAATTTGATTACACCATATGTTGCTCTCACACTTCCAGCCTTTTTTTTTTTCTT
ACTGTTAGCTTTATAGTGTCAGCTACTAAAAAGCATCCTGCTGCTGCAGTGCAATTCTTGCTTA
ACTAATATTAAAATTGGGGGAACATGTTCATGTTTTCTGACATGTTGTTCATTATTGCACATCT
TATTGCAACAAAGTGCTTTTTAGCAGCCAGCACTGTATTTTTTACCTTGAGACAATCTGCATTT
CTTTTATAATACTAATTATATACTTTATAGGCTTTATAATGACTGTTAAGTTTATAAACAGTCA
CTATGAATATTGCAACGGTAATTTTATATGTTAGTTTATCGGACATAAATCTTGTTTAATTTTA
TATTTTGTTACCGATACTTTAGGGGATCAAGGGAAGAGACATAACTCTTTCTCTGAAAAGCTTC
TTGGTACTTAGAGTAGTGAAACTGTAAAACAGTAAACATCTGGTATTGAGAGGTGATATGATGG
GGCATTAAGAATTCCTGTGGGTGTTTGTAAATTATGTATATCAATTGGATATTGTTGAAGGTAT
GTAAACAGCGGCTATGTATAACTTAACCTTGATTCATAAGGTCTTAGGCTATGACTCTTCATTG
ACATCTCATTAGAAGCTTTGGAAAACATTCTATTTTTAAACAGTATTTATATGTGGACTTCTGT
TGTCACTCACTTTGGACTTTATATTTTCATAGAGTCTTTATGGAAAAATGGAATTTATTTTCCA
CTCATAGCTGAGACTGCTGCATGTTTTCACCTGATTTTTTGTTTGTTTGTTTTGTTTTGTAGCT
TTACCAATGAATATTTTTGGAAATTGAATTTGATGTTTTCAAACTGAGGATTGTGAGTTTAGAT
TAGAATTACATACAAGAAGCTTTAAGGCTATGTCCTTGGATCAAAACACTTCATGATAAATCTA
TTGTGAAGGCATATTCTTAAGCAATCTGGATTTTTAAATTTCTGTTAGTAGTTTTGGAAGAAAT
GATAAGGAAAATTGAATAATTTCAAAGTGTTTCTTGAGTCATTGATTTAGCATCTCAAATGTTA
ATTAGAATAATTGGAATCACTTTTTAAAGACTTTTCAAGTTACCTTCCTTGGGAAGTTTGTGCA
GTGTTATAGTTTAGCTTAGGCTCCTCTTACAGGATAATGGTTTTGCTAGTTTAAAACTGTAACC
AAACTAACTGGTCAAATAACATATATCTAAAACACTTAAAATATTAGAAAATTTTGGAATGTTA
AAACCAAACTTTTTGCTGATGATTTTTGTTATTTATGGAACTGATATTTGTGTATTTAACATAC
TTCTGGAAATATATGCCTTTCTTAAAATTGTTAACCATGCATTTAATACCATGGCCTATCTATA
GAATTAAATATTTTGGACCAGGTTACCTATGGCACAGTCTTGCTGTGTTTGGGGTAAATACCAT
AATGTTTAATTTTCTACTTTGACTTCTAGAAGATAGAAACCATGTCTGTGTTTTGTGCGTCTAT
AAAAGGAGAACTACATACTAATATTAAAATAATTTCTTATGACTGTGAATCACTCATTTATTTT
TCCAGTAATTGATATTGTACATTCCTAGTGCTATTAGTTATGTATGTATGTATGTATGTATGTA
TGTATGTAACTTTTAGAGTTTCAACTGAAAGTTGTAAGTATTTCTTTTGATCAGGGCTCCTTAA
TCTCATTTTAATGTGTTTGAATTAACTGTAGTTATTTATTTTTGTGTTAACCATCTAAGCCAAC
TGTAATGACATGTACACTAATAAAGAATTGAAAGTTTGTAGTTGTTGACATTGAACCCAGTTGT
TGCTGAGTTGAAAGCTTAAAATATGGGAGTAATTTGCTGCTATACTTCCTTTGAGAGAGAATGG
AGAGAGAAGTAGAACCTAATAATGATCATGAACTTCAGGGAAAGTACTTGAGAGGATACGGGGT
CCACTCTGGTTTCTTGTGTTCAGTGAGGACGGTGATCATCTGATTCCCAGCTGAAGACCTCTCA
TACTCTTTCAGAGAGAGAATTTGCATTTTTAGAGCTGTTAGCAAAATGTGAAATGCTGATGTTC
CTGCTTAGCTGTATGAATGTAGCTTTGTTTCATTTATACATTGATTCATGTAAAGATACATCTC
CTAAGTCTTATAAATGTTGATCCAGTTCAACAAAAAAGTAAACTTAAAATAATATAGACTTTGT
TATTTGCCAAAGAAGATTCTTGAAAAATTTGTATCCTTTTTTTTTTTTTTTTTTTTACAAATGT
TTAAAGTAATTTCATTTGGCTTCATGCCACCTCCCCTCCTTTTCTCCCCTGCCCTTTACTGCCT
CATGAACCATGGCAAACATTCTTTAGAAAACGACAACGAAAATAGGGACTATCAAAAAGGGAAT
AGAACTTACTAGGGGAACAGTTTCACCTCTCCAGTGGGTCTAAAGAAATGCAACTTTATGTCAC
TTAAAAAATGCAATTGTCTGATTTCCTTATCTTCTTTCCTTTTTAAAGTCTGTATCAGATGATT
TTTTTCATTTGTTTTCTGGGGAAATACCAGTTTCTTTT

hide sequence

RefSeq Acc Id:

XM_013357225 ⟹ XP_013212679

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	16,225,279 - 16,258,745 (-)	NCBI
SpeTri2.0	NW_004936470	23,651,430 - 23,684,838 (-)	NCBI

Sequence:

show sequence

GCCATTTCCGGCGGGCAGAAACTAGGAAGAAACTTGGAGCCGCCAAGGCGCTCCAGCTACCAAT
CGCCGCCGCCGCTGCTGTGCCCTGTGGCCCGGGCCGCGCTGAGCTGTCGGGAGGCCTGACCATG
GGGCAGCGCGGGCCCACCGCAGTGTGAGGCGCGGAGCCTCCCGCGGGCTCCCCTGACAGGCCGG
GGACCGGCAGGCGGGAGGCGTCGTTCGGCCGCGGTCGCGGCTCCGGCCCGGGCATCATGAACAT
AGACGTGGAGTTCCACATCCGGCACAACTACCCCTGGAGCAAGTTGCCCGCCAACGTGAGACAG
AGTCTTGGAAATTCACAGAGGGAATATGAAAAGCAGGTTGTCCTGTACAGTATCCGCAATCAAC
TACGATACAGAAATAACTTAGTTAAACATGTCAAGAAAGATGAACGCAAATACTATGAGGAGCT
GCTAAAGTACAGTCGAGATCACCTCATGCTGTATCCTTACCACTTATCAGATATTATGGTGAAG
GGTCTGCGGATAACACCATTTTCCTACTATACTGGGATTATGGAGGACATTATGAACAGTGAGA
AAAGTTATGATTCATTGCCCAATTTTACTGCTGCTGACTGTCTGAGGCTTCTTGGCATAGGAAG
GAACCAGTATATTGATCTTATGAATCAGTGTAGATCATCAAAAAAATTCTTCAGAAGGAAAACG
GCTCGTGATCTTCTGCCCATAAAGCCAGTAGAAATCACCATAGAGGCGTGGTGGGTAGTACAGT
CTGGATATATCACAGAAGATGACATCAAGATATGCACTTTGCCTGAGAAATGCGCTATTGATAA
GATCATCGATTCAGGCCCTCAACTCTCTGGATCACTAGATTACAATATAGTACATAGTTTATAT
AACAAAGGATTTATTTATCTGGATGTACCGATATCTGATGACAGTTGTATAGCAGTTCCTCCTC
TTGAAGGTTTTGTAATGAATCGAGTACAGGGTGATTATTTTGAAACTCTACTCTATAAAATATT
TGTTTCAATAGATGAGCACACTAATGTTGCAGAGCTTGCCAATGTCCTTGAGATAGACTTATCT
CTGGTTAAGAATGCTGTTTCAATGTATTGCCGATTAGGCTTTGCCCATAAGAAGGGACAAGTAA
TAAATTTGGATCAACTTCATTCATCGTGGAAGAATGTTCCATCCGTAAACAGATTAAAGAGTAC
TTTAGATCCACAAAAGATGCTCTTATGGGATGGTGGGGAAAGTCGGAGTCCTGTGCAAGAAGCT
TCTTCGGCTACTGACACAGACACAAATAGTCAAGAAGATCCAGCTGACACAGCTAGTTTAAGCA
GTTTGAGTCTGTCTACAGGATATACGAAGCGTATTGCCTTCCTATTTGATTCAACTCTTACTGC
CTTTTTAATGATGGGAAATCTTTCACCAAACTTGAAAAGTCATGCAGTCACAATGTTTGAAGTA
GGCAAACTCTCAGATGAATCTCTGGACAGCTTTCTTATAGAACTAGAAAAGGTTCAGAGCACTG
GTGAAGGAGAAGCACAGAGATATTTTGATCATGCACTTACTCTGAGAAACACAATACTATTTCT
GAGACATAATAAAGACCTAGTTGCACAAACTGCTCAGCCAGACCAACCCAATTATGGTTTTCCC
TTGGATCTCTTACGCTGTGAAAGCCTCCTTGGTTTGGACCCTGCCACTTGCAGCAGAGTTCTAA
ACAAAAATTATACACTGCTTGTTTCCATGGCTCCTCTCACCAATGAAATCCGGCCAATCAGCAG
CTGTACTCCTCAGCATATTGGACCAGCTATCCCAGAAGTCAGTTCTGTCTGGTTTAAACTGTAC
ATTTACTTTATCACTGGGCAAGGACCACCATCTCTCTTACTGTCCAAAGGTACAAGACTTCGAA
AACTCCCAGATATATTCCAGGGTTATGATCGATTACTCATAACATCTTGGGGTCACGATCCTGG
GGTAGTTCCTACATCAAATGTACTCACGATGTTGAATGATGCTTTAACACATTCTGCGGTTTTA
ATTCAGGGACATGGTTTGCATGGGATAGGAGAAACTGTCCATATACCGTTTCCATTTGATGAAA
CAGAACTGCAAGGAGAATTTACTCGTGTCAATATGGGTGTTCATAAAGCATTACAAATATTAAG
GAACAAAGTGGACTTGCAGCATTTCTGTGGATATATCACCATGTTGAATTCTTCTAGCCAACTT
GCAAGTAGAAAACTCAGTGATGCTTCTGATGAGAGAGGAGATCCTGATTTGGCTTCTGGCTCAG
ATGTAAATGGCAGTACAGAATCATTTGAAATGGTCATTGAGGAAGCAACTGTAGATTCAGCAGT
GAAACAAAACTCTGGTGCCACAACAGAAGCAGATCCGTGGTGTTAAGGATAAGTTTTGTATCTT
TTTAAGGTGCCACAACAGAAGCAGAGTGGGT

hide sequence

RefSeq Acc Id:

XM_040293686 ⟹ XP_040149620

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405303	16,221,719 - 16,248,810 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_005316232	(Get FASTA)	NCBI Sequence Viewer
	XP_013212679	(Get FASTA)	NCBI Sequence Viewer
	XP_077872855	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000001631.3
	ENSSTOP00015008377
GenBank Protein	KAG3273645	(Get FASTA)	NCBI Sequence Viewer
	KAG3273646	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005316232 ⟸ XM_005316175
- Peptide Label:	isoform X1
- UniProtKB:	I3LZA3 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNIDVEFHIRHNYPWSKLPANVRQSLGNSQREYEKQVVLYSIRNQLRYRNNLVKHVKKDERKYY EELLKYSRDHLMLYPYHLSDIMVKGLRITPFSYYTGIMEDIMNSEKSYDSLPNFTAADCLRLLG IGRNQYIDLMNQCRSSKKFFRRKTARDLLPIKPVEITIEAWWVVQSGYITEDDIKICTLPEKCA IDKIIDSGPQLSGSLDYNIVHSLYNKGFIYLDVPISDDSCIAVPPLEGFVMNRVQGDYFETLLY KIFVSIDEHTNVAELANVLEIDLSLVKNAVSMYCRLGFAHKKGQVINLDQLHSSWKNVPSVNRL KSTLDPQKMLLWDGGESRSPVQEASSATDTDTNSQEDPADTASLSSLSLSTGYTKRIAFLFDST LTAFLMMGNLSPNLKSHAVTMFEVGKLSDESLDSFLIELEKVQSTGEGEAQRYFDHALTLRNTI LFLRHNKDLVAQTAQPDQPNYGFPLDLLRCESLLGLDPATCSRVLNKNYTLLVSMAPLTNEIRP ISSCTPQHIGPAIPEVSSVWFKLYIYFITGQGPPSLLLSKGTRLRKLPDIFQGYDRLLITSWGH DPGVVPTSNVLTMLNDALTHSAVLIQGHGLHGIGETVHIPFPFDETELQGEFTRVNMGVHKALQ ILRNKVDLQHFCGYITMLNSSSQLASRKLSDASDERGDPDLASGSDVNGSTESFEMVIEEATVD SAVKQNSGATTEAEWVPLELCFGIPLFSSELNRKVCKKIATHGLCRKESLQNLLHSSRKLSLQV LNFVHSFQEGASTLDIHTEPNFSSLLSPSSYVDMGVPLPAKNLIFKDGILSEWSGRSPSSLLIA NLHLQ hide sequence

RefSeq Acc Id:

XP_013212679 ⟸ XM_013357225

- Peptide Label:

isoform X2

- Sequence:

show sequence

MNIDVEFHIRHNYPWSKLPANVRQSLGNSQREYEKQVVLYSIRNQLRYRNNLVKHVKKDERKYY
EELLKYSRDHLMLYPYHLSDIMVKGLRITPFSYYTGIMEDIMNSEKSYDSLPNFTAADCLRLLG
IGRNQYIDLMNQCRSSKKFFRRKTARDLLPIKPVEITIEAWWVVQSGYITEDDIKICTLPEKCA
IDKIIDSGPQLSGSLDYNIVHSLYNKGFIYLDVPISDDSCIAVPPLEGFVMNRVQGDYFETLLY
KIFVSIDEHTNVAELANVLEIDLSLVKNAVSMYCRLGFAHKKGQVINLDQLHSSWKNVPSVNRL
KSTLDPQKMLLWDGGESRSPVQEASSATDTDTNSQEDPADTASLSSLSLSTGYTKRIAFLFDST
LTAFLMMGNLSPNLKSHAVTMFEVGKLSDESLDSFLIELEKVQSTGEGEAQRYFDHALTLRNTI
LFLRHNKDLVAQTAQPDQPNYGFPLDLLRCESLLGLDPATCSRVLNKNYTLLVSMAPLTNEIRP
ISSCTPQHIGPAIPEVSSVWFKLYIYFITGQGPPSLLLSKGTRLRKLPDIFQGYDRLLITSWGH
DPGVVPTSNVLTMLNDALTHSAVLIQGHGLHGIGETVHIPFPFDETELQGEFTRVNMGVHKALQ
ILRNKVDLQHFCGYITMLNSSSQLASRKLSDASDERGDPDLASGSDVNGSTESFEMVIEEATVD
SAVKQNSGATTEADPWC

hide sequence

RefSeq Acc Id:	XP_040149620 ⟸ XM_040293686
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSSTOP00000001631 ⟸ ENSSTOT00000001827

Protein Domains

FAM91 C-terminal FAM91 N-terminal

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000001827	Ensembl, UniProtKB/TrEMBL
	ENSSTOG00015006887	ENTREZGENE
Ensembl Transcript	ENSSTOT00000001827.3	UniProtKB/TrEMBL
InterPro	FAM91	UniProtKB/TrEMBL
	FAM91_C_dom	UniProtKB/TrEMBL
	FAM91_N_dom	UniProtKB/TrEMBL
KEGG Report	iti:101961939	UniProtKB/TrEMBL
NCBI Gene	Fam91a1	ENTREZGENE
PANTHER	PROTEIN FAM91A1	UniProtKB/TrEMBL
	PTHR28441	UniProtKB/TrEMBL
Pfam	FAM91_C	UniProtKB/TrEMBL
	FAM91_N	UniProtKB/TrEMBL
UniProt	I3LZA3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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