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Gene: BTBD18 (BTB domain containing 18) Canis lupus familiaris

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Symbol:

BTBD18

Name:

BTB domain containing 18

RGD ID:

12372012

Description:

INVOLVED IN transposable element silencing (ortholog); FOUND IN nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

BTB/POZ domain-containing protein 18

RGD Orthologs

Alliance Orthologs

More Info

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More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	BTBD18 (BTB domain containing 18)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB
Mus musculus (house mouse):	Btbd18 (BTB domain containing 18)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Btbd18 (BTB domain containing 18)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Btbd18 (BTB domain containing 18)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	BTBD18 (BTB domain containing 18)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Btbd18 (BTB domain containing 18)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	BTBD18 (BTB domain containing 18)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	BTBD18 (BTB domain containing 18)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Btbd18 (BTB domain containing 18)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Btbd18 (BTB domain containing 18)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	38,470,643 - 38,478,512 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	38,471,214 - 38,478,068 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	38,017,653 - 38,025,583 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	39,152,558 - 39,160,604 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	39,154,089 - 39,160,337 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	38,735,718 - 38,743,648 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	38,308,870 - 38,316,800 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	38,939,377 - 38,947,316 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

DNA-templated transcription (IEA)

male meiosis I (IEA)

piRNA transcription (IBA,IEA)

positive regulation of transcription elongation by RNA polymerase II (IEA)

spermatogenesis (IBA,IEA)

transposable element silencing (IBA,ISO)

Cellular Component

nucleus (IBA,IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

BTBD18
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	38,470,643 - 38,478,512 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	38,471,214 - 38,478,068 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	38,017,653 - 38,025,583 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	39,152,558 - 39,160,604 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	39,154,089 - 39,160,337 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	38,735,718 - 38,743,648 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	38,308,870 - 38,316,800 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	38,939,377 - 38,947,316 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

BTBD18
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	57,743,514 - 57,753,166 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	57,743,514 - 57,753,148 (-)	Ensembl			hg38	GRCh38
GRCh37	11	57,510,986 - 57,519,291 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	57,268,182 - 57,275,829 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	11	54,867,702 - 54,875,969 (-)	NCBI		Celera
Cytogenetic Map	11	q12.1	NCBI
HuRef	11	53,859,620 - 53,867,885 (-)	NCBI		HuRef
CHM1_1	11	57,378,023 - 57,386,291 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	57,693,844 - 57,703,498 (-)	NCBI		T2T-CHM13v2.0

Btbd18
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	84,489,416 - 84,499,125 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	84,489,423 - 84,499,124 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	84,659,072 - 84,668,789 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	84,659,079 - 84,668,780 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	84,499,236 - 84,508,938 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
Celera	2	86,254,010 - 86,263,712 (+)	NCBI		Celera
Cytogenetic Map	2	D	NCBI
cM Map	2	49.45	NCBI

Btbd18
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	90,149,351 - 90,158,313 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	90,149,350 - 90,158,305 (+)	Ensembl				GRCr8
mRatBN7.2	3	69,743,057 - 69,751,096 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	69,745,012 - 69,751,042 (+)	Ensembl				mRatBN7.2
Dahl_SR_JrHsd	3	88,000,707 - 88,009,597 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	3	94,923,053 - 94,931,943 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	3	86,845,427 - 86,854,317 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	3	68,153,573 - 68,162,488 (+)	NCBI		F344_StmMcwi
Rnor_6.0	3	72,060,811 - 72,070,566 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	72,063,504 - 72,069,534 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	78,582,812 - 78,590,738 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	67,870,801 - 67,876,831 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	69,098,002 - 69,107,757 (+)	NCBI		Celera
Cytogenetic Map	3	q24	NCBI

Btbd18
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955511	2,640,647 - 2,648,768 (-)	Ensembl
ChiLan1.0	NW_004955511	2,641,848 - 2,647,679 (-)	NCBI	ChiLan1.0	ChiLan1.0

BTBD18
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	58,897,658 - 58,907,428 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	59,917,410 - 59,927,399 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	52,982,050 - 52,989,914 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	56,451,939 - 56,460,180 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	56,451,939 - 56,460,180 (-)	Ensembl			panPan2	panpan1.1

Btbd18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	14,696,730 - 14,701,639 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936581	4,810,709 - 4,815,018 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936581	4,810,636 - 4,815,410 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

BTBD18
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	13,217,759 - 13,227,516 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	13,217,392 - 13,227,787 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	12,850,453 - 12,861,420 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

BTBD18
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	15,479,781 - 15,486,956 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	15,480,059 - 15,486,336 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	112,831,411 - 112,838,315 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Btbd18
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624864	3,008,757 - 3,014,153 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624864	3,011,589 - 3,014,676 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Btbd18
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	62,043,400 - 62,049,570 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in BTBD18
70 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	22	21	15	5	6	5	5	31	21	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003432361	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022405398	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022405399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022405400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_022405401	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038424281	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038424282	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038500634	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038500635	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038563215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038563216	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038627330	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038627331	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000213	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000176	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000044807 ⟹ ENSCAFP00000041104

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	18	38,471,214 - 38,478,068 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845035709 ⟹ ENSCAFP00845027939

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	18	39,154,089 - 39,160,337 (+)	Ensembl

RefSeq Acc Id:

XM_003432361 ⟹ XP_003432409

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	18	38,470,643 - 38,478,512 (+)	NCBI
Dog10K_Boxer_Tasha	18	38,017,653 - 38,025,583 (+)	NCBI

Sequence:

show sequence

CGCGGCGGTACGAGGGCGCCAGGGGGTGGCTGCAAAGCCCGTGCGGCCTCGGCTGGTGGTGCCC
GCGAGCCCTGAATTCGGGCCTCCGGGGTCCCCACGCTCCATTCCCAGAAACCTTCGCGCCGAGA
GGTCTCTCTTGAAAGGAGTTGGGCCGGGGCGCCCGGAGCGTGCGGGACGGGACGCCCAGCATTG
CAGGGCCTGCCCTGAAGCCCAGCTTTCTCCGCCAGCCCCGATTCCTCGGCTCTGGACGGGGAGA
CCCTCAGGCCGTTGGCCCACCTGCGCTGCTTTGCTAAACCTCCCCGCGCGAGGCTGGGCTTGGG
GAGGAAGCAAGGCAGGCTGGGCAGAGGACCCAAGCACCGAGAGGTCGCCAAGCGCAGCTCCGAC
TGCACAGCTCGTCCAGTTTGACGGGAGCTGTTCAGATCCTCGGTGCCACCTGACAGAAAACTGC
ATGTCAGGAAAGGAACAGCAGCTGTGCGGGGAGTGTGGGGGTTTCAGTGCAAAAAGCTGGAAAC
ACAGCTGCACTAGGCTCACTTTGGTCAAGAACATCTGAAGCAAGAGTGGCAGCGTCCTTATTTC
TGAGAGACTTTCCCACCCGGTCCTGCAGCTGTTTTCTCTACTGTGCACCCTCTGCTGGAATCTG
ATCTGTGAAAACCTAGAAGGTTTCAGAGACTAACATGTGCTCTCCTGCAAGTTCCAAAATCCTA
TACAGGAACCCCCGGTTTCTCCGGTTAGCTTTTCTGCAGCTGCATCACCAGCAACAGACTGGTG
TGTTCTGTGATGTCCTTCTGCAGGCAGAAGGTGAGGCAGTCCCAGCCCATTGCTGCATCCTGTC
AGCCTGCAGTCCCTTCTTCACAGAGCGTCTGGAGCGGGAGAGGCCAGCTCAGGGTCGGAAGGTG
GTGCTGGAGCTGGGGGGCTTGAAGATCAGGACACTGAGGAAGCTGGTGGACTTCTTATATACCT
CAGAGATGGAAGTATCTCGAGAAGAAGCCCAGGATGTGCTTTCTGCTGCCCGTCAGCTCCGTGT
ATCTGAGCTAGAATCCCTTCAACTAGAGGGTGGGAAGTTGGTAAAGGCCCCCCAGGGCCGAAGA
CTGAACCGGGAGTGCTTACAGCCTCCAAGTGCTGCACCAATCTCTGCCAGGGTGGTGGCATCCA
GCCGTCGACCTCGGACTCCACTCCCTGCAACCCAGACTCCTTGTCCTCTTGGGCCAGTGAGATT
AAAGTCCTCGGGGAAGGAGGAGGGGCCCTTGGAGAAAAGCAACAGACAGAATGCAGAGAACTTG
TCCGGCAATCTTCTGCTCAAGAAGAAGGCCAGAGCTTGCCCAATTCCACAAGAAAAGTGTTCTT
CACCATCAGGCCACAGCCAGGGACCGAAAGAGAGTAAGAGTGACCCTGCCCTTGCTCCTACGGC
ACTTTCCCCACCCAGTATGTACCCTTCTGTGGATGAGCGGCTATTGCCCAGAAAGATCAGACTG
AGTCGCTCAAAGCCATCTCCTGATATCTGTACATCTAAGCCTTCCAGCATGGTAAGCGGACCCA
GCTCAGTACCCACAGTCCCTGGCCGGCGTCTTTGGCGGCAGAAGAGTATAAATAAAGTACCAGA
AGACAAGGAGAAACCAGGGAGAGCTAGTCCTCTACAGAGCATCCCAAGCCCATCTGGTCTTGGA
AAGACAGGTGGGAGCAAGAAGAGGAGCCCTGAAGTCAGGGCACCTAACTCAGACTCTGCAGAAG
AGGGGCAGGTTGGAAGAGTGAAGCTTCGGAAAATTGTCAATGGAACATGCTGGGAGGTGGTACA
AGACCCTCCCCTCAAAAACTCTCAAGATAGCCCTCAGATCCCAGAATCTCAATACCCAGAAGAG
CCTGCGAGTACTCAGCCATCCTCACTTAATGAGCTGGAAACATCATCTGCTAGGGTAGACCTGT
GTCAGGACTCCCCCATGTGCCCTAGGCTACAAGACATTCTGTTATCTGCTACCCACTCCCCAGA
CCACCCAGTGGTGAAATCCGAGTTTGGGTCCAGTCTAGAGCTGGTAGGGAAGGAACCTGGGCTG
GATATTGACTGCCGAGAGCCCTATGCATTTGACACAGCCCTGCTGGGGCAGCCCTGCGAAGCTG
AGGAGTACCGTATCACAAGTGCTGCTGCCACCAGTGAACTGGAAGAGATCCTAGACTTCATGCT
GTGTGGCTCAGACATTGAGCCACCCATAGGGTCTCTGGAAAGTCCTGAAGCCGAGGGCTGCAGG
ACCCCTAGCTATCACCTGACAGAAACAGGAAAGAACTGGATTGAAGGGGAGGAATGGTGTTTGC
CAGACATGGAACTCTGGCCCAGGGAGCTCTCAGGATTGGAAAAAGAACCTGTTGATGAGAACAA
AGAGCCAATTGAGCCCTTTGGCCCCCTTGTCATGCACTCTGAGAACAAAGAGCCCATCGAGTCC
CTTAGCCCCCTTGTCTTACCCTCTGAGGTAAGTGAAGGGGAGGTACTTTCAGTAGGAGGCTCTT
GGACTCCAGATCTGGAAATTACCAGCTCCCAACCACTGGATGGTCAGAGAGAGAAGCTTCACAT
GGACTCTCTTGACCTTCCCCAAAGGTCCTATGAGGATCTCTCACCTCCCTGTTCAAACTGGATG
GACACTAGGCCAGAAGTGTCCCTAAGTATGGATGAGGTATTATATCCTGCTCCAGAAGCAGGCA
AGGAGCTACTTGGCAACTCTGAATTGTTGGACCCACTTCCTGCCAGCTCCGAAGAGGAAGAGAT
TGATGTGGTGGACTGGACATTAGAGGGGAGGCTGGTGCCCACTGATATTCCCTCTGTGTGGCCC
GACCCTTCCTCAGAGTCAGACACAGAGATAGACATATTAACGTAGAACAGGAGTACAGGTTAGG
GGCAGTGGGAGGGTGGGAAATGTTTGCTAGCAAAGGTATAATGGCAGAGGCTGGTACATGCCCT
GTCCTCTTAGCAAAAGAGGCAAGTGTACTGTAGTTCTCTATGTCCTTTCCTCTCCCCTCACCCC
CAAGGCTTTGGGAGCCAAGCAAAACTAGTACCATGGGTACAAAATTATGAACTTGAACCATCTT
ATTTCTTTGTAATCTATTTTCCAGTTAGCGATAAACAAGTGAAATTATAAACTGTGTGGTCCCC
AACTCTACCGGGTCATAAAATAACCAACACCAGGTCTTCTAAGTTATGAGGCATCTAGTCACTG
CTAATTTAATAATAAATGAGAATACCCTCTGTGAAACAGAAAATGGGAAACAGTGCTGGGATGG
AACAAGTGGGTAAAAGTAACAGAACGTTTTTGTATATCTAA

hide sequence

RefSeq Acc Id:

XM_022405398 ⟹ XP_022261106

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	18	38,470,643 - 38,478,512 (+)	NCBI
Dog10K_Boxer_Tasha	18	38,017,653 - 38,025,583 (+)	NCBI

Sequence:

show sequence

CGCGGCGGTACGAGGGCGCCAGGGGGTGGCTGCAAAGCCCGTGCGGCCTCGGCTGGTGGTGCCC
GCGAGCCCTGAATTCGGGCCTCCGGGGTCCCCACGCTCCATTCCCAGAAACCTTCGCGCCGAGA
GGTCTCTCTTGAAAGGAGTTGGGCCGGGGCGCCCGGAGCGTGCGGGACGGGACGCCCAGCATTG
CAGGGCCTGCCCTGAAGCCCAGCTTTCTCCGCCAGCCCCGATTCCTCGGCTCTGGACGGGGAGA
CCCTCAGGCCGTTGGCCCACCTGCGCTGCTTTGCTAAACCTCCCCGCGCGAGGCTGGGCTTGGG
GAGGAAGCAAGGCAGGCTGGGCAGAGGACCCAAGCACCGAGAGGTCGCCAAGCGCAGCTCCGAC
TGCACAGCTCGTCCAGTTTGACGGGAGCTGTTCAGATCCTCGGTGCCACCTGACAGAAAACTGC
ATGTCAGGAAAGGAACAGCAGCTGTGCGGGGAGTGTGGGGGTTTCAGTGCAAAAAGCTGGAAAC
ACAGCTGCACTAGGCTCACTTTGGTCAAGAACATCTGAAGCAAGAGTGGCAGCGTCCTTATTTC
TGAGAGACTTTCCCACCCGGTCCTGCAGCTGTTTTCTCTACTGTGCACCCTCTGCTGGTTAGTG
TGATAAGAGTGAGCTCAAAGAAAAGGAGGAATCTGATCTGTGAAAACCTAGAAGGTTTCAGAGA
CTAACATGTGCTCTCCTGCAAGTTCCAAAATCCTATACAGGAACCCCCGGTTTCTCCGGTTAGC
TTTTCTGCAGCTGCATCACCAGCAACAGACTGGTGTGTTCTGTGATGTCCTTCTGCAGGCAGAA
GGTGAGGCAGTCCCAGCCCATTGCTGCATCCTGTCAGCCTGCAGTCCCTTCTTCACAGAGCGTC
TGGAGCGGGAGAGGCCAGCTCAGGGTCGGAAGGTGGTGCTGGAGCTGGGGGGCTTGAAGATCAG
GACACTGAGGAAGCTGGTGGACTTCTTATATACCTCAGAGATGGAAGTATCTCGAGAAGAAGCC
CAGGATGTGCTTTCTGCTGCCCGTCAGCTCCGTGTATCTGAGCTAGAATCCCTTCAACTAGAGG
GTGGGAAGTTGGTAAAGGCCCCCCAGGGCCGAAGACTGAACCGGGAGTGCTTACAGCCTCCAAG
TGCTGCACCAATCTCTGCCAGGGTGGTGGCATCCAGCCGTCGACCTCGGACTCCACTCCCTGCA
ACCCAGACTCCTTGTCCTCTTGGGCCAGTGAGATTAAAGTCCTCGGGGAAGGAGGAGGGGCCCT
TGGAGAAAAGCAACAGACAGAATGCAGAGAACTTGTCCGGCAATCTTCTGCTCAAGAAGAAGGC
CAGAGCTTGCCCAATTCCACAAGAAAAGTGTTCTTCACCATCAGGCCACAGCCAGGGACCGAAA
GAGAGTAAGAGTGACCCTGCCCTTGCTCCTACGGCACTTTCCCCACCCAGTATGTACCCTTCTG
TGGATGAGCGGCTATTGCCCAGAAAGATCAGACTGAGTCGCTCAAAGCCATCTCCTGATATCTG
TACATCTAAGCCTTCCAGCATGGTAAGCGGACCCAGCTCAGTACCCACAGTCCCTGGCCGGCGT
CTTTGGCGGCAGAAGAGTATAAATAAAGTACCAGAAGACAAGGAGAAACCAGGGAGAGCTAGTC
CTCTACAGAGCATCCCAAGCCCATCTGGTCTTGGAAAGACAGGTGGGAGCAAGAAGAGGAGCCC
TGAAGTCAGGGCACCTAACTCAGACTCTGCAGAAGAGGGGCAGGTTGGAAGAGTGAAGCTTCGG
AAAATTGTCAATGGAACATGCTGGGAGGTGGTACAAGACCCTCCCCTCAAAAACTCTCAAGATA
GCCCTCAGATCCCAGAATCTCAATACCCAGAAGAGCCTGCGAGTACTCAGCCATCCTCACTTAA
TGAGCTGGAAACATCATCTGCTAGGGTAGACCTGTGTCAGGACTCCCCCATGTGCCCTAGGCTA
CAAGACATTCTGTTATCTGCTACCCACTCCCCAGACCACCCAGTGGTGAAATCCGAGTTTGGGT
CCAGTCTAGAGCTGGTAGGGAAGGAACCTGGGCTGGATATTGACTGCCGAGAGCCCTATGCATT
TGACACAGCCCTGCTGGGGCAGCCCTGCGAAGCTGAGGAGTACCGTATCACAAGTGCTGCTGCC
ACCAGTGAACTGGAAGAGATCCTAGACTTCATGCTGTGTGGCTCAGACATTGAGCCACCCATAG
GGTCTCTGGAAAGTCCTGAAGCCGAGGGCTGCAGGACCCCTAGCTATCACCTGACAGAAACAGG
AAAGAACTGGATTGAAGGGGAGGAATGGTGTTTGCCAGACATGGAACTCTGGCCCAGGGAGCTC
TCAGGATTGGAAAAAGAACCTGTTGATGAGAACAAAGAGCCAATTGAGCCCTTTGGCCCCCTTG
TCATGCACTCTGAGAACAAAGAGCCCATCGAGTCCCTTAGCCCCCTTGTCTTACCCTCTGAGGT
AAGTGAAGGGGAGGTACTTTCAGTAGGAGGCTCTTGGACTCCAGATCTGGAAATTACCAGCTCC
CAACCACTGGATGGTCAGAGAGAGAAGCTTCACATGGACTCTCTTGACCTTCCCCAAAGGTCCT
ATGAGGATCTCTCACCTCCCTGTTCAAACTGGATGGACACTAGGCCAGAAGTGTCCCTAAGTAT
GGATGAGGTATTATATCCTGCTCCAGAAGCAGGCAAGGAGCTACTTGGCAACTCTGAATTGTTG
GACCCACTTCCTGCCAGCTCCGAAGAGGAAGAGATTGATGTGGTGGACTGGACATTAGAGGGGA
GGCTGGTGCCCACTGATATTCCCTCTGTGTGGCCCGACCCTTCCTCAGAGTCAGACACAGAGAT
AGACATATTAACGTAGAACAGGAGTACAGGTTAGGGGCAGTGGGAGGGTGGGAAATGTTTGCTA
GCAAAGGTATAATGGCAGAGGCTGGTACATGCCCTGTCCTCTTAGCAAAAGAGGCAAGTGTACT
GTAGTTCTCTATGTCCTTTCCTCTCCCCTCACCCCCAAGGCTTTGGGAGCCAAGCAAAACTAGT
ACCATGGGTACAAAATTATGAACTTGAACCATCTTATTTCTTTGTAATCTATTTTCCAGTTAGC
GATAAACAAGTGAAATTATAAACTGTGTGGTCCCCAACTCTACCGGGTCATAAAATAACCAACA
CCAGGTCTTCTAAGTTATGAGGCATCTAGTCACTGCTAATTTAATAATAAATGAGAATACCCTC
TGTGAAACAGAAAATGGGAAACAGTGCTGGGATGGAACAAGTGGGTAAAAGTAACAGAACGTTT
TTGTATATCTAA

hide sequence

RefSeq Acc Id:

XM_038424281 ⟹ XP_038280209

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	18	39,152,558 - 39,160,603 (+)	NCBI

RefSeq Acc Id:

XM_038424282 ⟹ XP_038280210

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	18	39,152,558 - 39,160,604 (+)	NCBI

RefSeq Acc Id:

XM_038500634 ⟹ XP_038356562

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	18	38,735,718 - 38,743,648 (+)	NCBI

RefSeq Acc Id:

XM_038500635 ⟹ XP_038356563

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	18	38,735,718 - 38,743,648 (+)	NCBI

RefSeq Acc Id:

XM_038563215 ⟹ XP_038419143

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	18	38,939,377 - 38,947,315 (+)	NCBI

RefSeq Acc Id:

XM_038563216 ⟹ XP_038419144

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	18	38,939,377 - 38,947,316 (+)	NCBI

RefSeq Acc Id:

XM_038627330 ⟹ XP_038483258

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	18	38,308,870 - 38,316,800 (+)	NCBI

RefSeq Acc Id:

XM_038627331 ⟹ XP_038483259

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	18	38,308,870 - 38,316,800 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003432409	(Get FASTA)	NCBI Sequence Viewer
	XP_022261106	(Get FASTA)	NCBI Sequence Viewer
	XP_038280209	(Get FASTA)	NCBI Sequence Viewer
	XP_038280210	(Get FASTA)	NCBI Sequence Viewer
	XP_038356562	(Get FASTA)	NCBI Sequence Viewer
	XP_038356563	(Get FASTA)	NCBI Sequence Viewer
	XP_038419143	(Get FASTA)	NCBI Sequence Viewer
	XP_038419144	(Get FASTA)	NCBI Sequence Viewer
	XP_038483258	(Get FASTA)	NCBI Sequence Viewer
	XP_038483259	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000041104.1
	ENSCAFP00040022052.1
	ENSCAFP00845027939
	ENSCAFP00845027939.1

RefSeq Acc Id:

XP_003432409 ⟸ XM_003432361

- UniProtKB:

A0A8C0YXS6 (UniProtKB/TrEMBL), A0A8P0SUX0 (UniProtKB/TrEMBL), A0A8C0JK93 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MCSPASSKILYRNPRFLRLAFLQLHHQQQTGVFCDVLLQAEGEAVPAHCCILSACSPFFTERLE
RERPAQGRKVVLELGGLKIRTLRKLVDFLYTSEMEVSREEAQDVLSAARQLRVSELESLQLEGG
KLVKAPQGRRLNRECLQPPSAAPISARVVASSRRPRTPLPATQTPCPLGPVRLKSSGKEEGPLE
KSNRQNAENLSGNLLLKKKARACPIPQEKCSSPSGHSQGPKESKSDPALAPTALSPPSMYPSVD
ERLLPRKIRLSRSKPSPDICTSKPSSMVSGPSSVPTVPGRRLWRQKSINKVPEDKEKPGRASPL
QSIPSPSGLGKTGGSKKRSPEVRAPNSDSAEEGQVGRVKLRKIVNGTCWEVVQDPPLKNSQDSP
QIPESQYPEEPASTQPSSLNELETSSARVDLCQDSPMCPRLQDILLSATHSPDHPVVKSEFGSS
LELVGKEPGLDIDCREPYAFDTALLGQPCEAEEYRITSAAATSELEEILDFMLCGSDIEPPIGS
LESPEAEGCRTPSYHLTETGKNWIEGEEWCLPDMELWPRELSGLEKEPVDENKEPIEPFGPLVM
HSENKEPIESLSPLVLPSEVSEGEVLSVGGSWTPDLEITSSQPLDGQREKLHMDSLDLPQRSYE
DLSPPCSNWMDTRPEVSLSMDEVLYPAPEAGKELLGNSELLDPLPASSEEEEIDVVDWTLEGRL
VPTDIPSVWPDPSSESDTEIDILT

hide sequence

RefSeq Acc Id:

XP_022261106 ⟸ XM_022405398

- UniProtKB:

A0A8C0YXS6 (UniProtKB/TrEMBL), A0A8P0SUX0 (UniProtKB/TrEMBL), A0A8C0JK93 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MCSPASSKILYRNPRFLRLAFLQLHHQQQTGVFCDVLLQAEGEAVPAHCCILSACSPFFTERLE
RERPAQGRKVVLELGGLKIRTLRKLVDFLYTSEMEVSREEAQDVLSAARQLRVSELESLQLEGG
KLVKAPQGRRLNRECLQPPSAAPISARVVASSRRPRTPLPATQTPCPLGPVRLKSSGKEEGPLE
KSNRQNAENLSGNLLLKKKARACPIPQEKCSSPSGHSQGPKESKSDPALAPTALSPPSMYPSVD
ERLLPRKIRLSRSKPSPDICTSKPSSMVSGPSSVPTVPGRRLWRQKSINKVPEDKEKPGRASPL
QSIPSPSGLGKTGGSKKRSPEVRAPNSDSAEEGQVGRVKLRKIVNGTCWEVVQDPPLKNSQDSP
QIPESQYPEEPASTQPSSLNELETSSARVDLCQDSPMCPRLQDILLSATHSPDHPVVKSEFGSS
LELVGKEPGLDIDCREPYAFDTALLGQPCEAEEYRITSAAATSELEEILDFMLCGSDIEPPIGS
LESPEAEGCRTPSYHLTETGKNWIEGEEWCLPDMELWPRELSGLEKEPVDENKEPIEPFGPLVM
HSENKEPIESLSPLVLPSEVSEGEVLSVGGSWTPDLEITSSQPLDGQREKLHMDSLDLPQRSYE
DLSPPCSNWMDTRPEVSLSMDEVLYPAPEAGKELLGNSELLDPLPASSEEEEIDVVDWTLEGRL
VPTDIPSVWPDPSSESDTEIDILT

hide sequence

Ensembl Acc Id:

ENSCAFP00000041104 ⟸ ENSCAFT00000044807

RefSeq Acc Id:

XP_038356563 ⟸ XM_038500635

RefSeq Acc Id:

XP_038356562 ⟸ XM_038500634

RefSeq Acc Id:

XP_038483259 ⟸ XM_038627331

RefSeq Acc Id:

XP_038483258 ⟸ XM_038627330

RefSeq Acc Id:	XP_038280210 ⟸ XM_038424282
- UniProtKB:	A0A8I3PJ89 (UniProtKB/TrEMBL), A0A8C0JK93 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038280209 ⟸ XM_038424281
- UniProtKB:	A0A8I3PJ89 (UniProtKB/TrEMBL), A0A8C0JK93 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038419144 ⟸ XM_038563216
- UniProtKB:	A0A8P0SUX0 (UniProtKB/TrEMBL), A0A8C0JK93 (UniProtKB/TrEMBL), A0A8C0YXS6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038419143 ⟸ XM_038563215
- UniProtKB:	A0A8C0JK93 (UniProtKB/TrEMBL), A0A8C0YXS6 (UniProtKB/TrEMBL), A0A8P0SUX0 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845027939 ⟸ ENSCAFT00845035709

Protein Domains

BTB

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000028691	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00040013747	UniProtKB/TrEMBL
	ENSCAFG00845020281	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000044807.3	UniProtKB/TrEMBL
	ENSCAFT00040025368.1	UniProtKB/TrEMBL
	ENSCAFT00845035709	ENTREZGENE
	ENSCAFT00845035709.1	UniProtKB/TrEMBL
Gene3D-CATH	Potassium Channel Kv1.1, Chain A	UniProtKB/TrEMBL
InterPro	BTB/POZ_dom	UniProtKB/TrEMBL
	BTBD18	UniProtKB/TrEMBL
	SKP1/BTB/POZ_sf	UniProtKB/TrEMBL
KEGG Report	cfa:100688289	UniProtKB/TrEMBL
NCBI Gene	BTBD18	ENTREZGENE
PANTHER	BTB/POZ DOMAIN-CONTAINING PROTEIN 18	UniProtKB/TrEMBL
	PTHR47639	UniProtKB/TrEMBL
Pfam	BTB	UniProtKB/TrEMBL
PROSITE	BTB	UniProtKB/TrEMBL
SMART	BTB	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54695	UniProtKB/TrEMBL
UniProt	A0A8C0JK93	ENTREZGENE
	A0A8C0YXS6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3PJ89	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0SUX0	ENTREZGENE
UniProt Secondary	A0A8P0SUX0	UniProtKB/TrEMBL
VGNC ID	VGNC:38550	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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