OR6K2 (olfactory receptor family 6 subfamily K member 2) - Rat Genome Database

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Gene: OR6K2 (olfactory receptor family 6 subfamily K member 2) Canis lupus familiaris
Analyze
Symbol: OR6K2
Name: olfactory receptor family 6 subfamily K member 2
RGD ID: 12353756
Description: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. [provided by RefSeq, Jul 2008]
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: LOC610561; olfactory receptor 6K2; olfactory receptor 6K2-like; olfactory receptor OR0415
RGD Orthologs
Human
Mouse
Rat
Bonobo
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13823,042,900 - 23,045,240 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3823,043,721 - 23,044,686 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3823,065,822 - 23,066,787 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03823,175,283 - 23,176,248 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.13822,938,358 - 22,939,322 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03823,473,085 - 23,474,050 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03823,904,351 - 23,905,316 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
OR6K2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13823,042,900 - 23,045,240 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3823,043,721 - 23,044,686 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha3823,065,822 - 23,066,787 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03823,175,283 - 23,176,248 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.13822,938,358 - 22,939,322 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03823,473,085 - 23,474,050 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03823,904,351 - 23,905,316 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
OR6K2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381158,699,678 - 158,700,652 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1158,699,678 - 158,700,652 (-)Ensemblhg38GRCh38
GRCh371158,669,468 - 158,670,442 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361156,936,092 - 156,937,066 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341155,482,540 - 155,483,515NCBI
Celera1131,740,163 - 131,741,137 (-)NCBICelera
Cytogenetic Map1q23.1NCBI
HuRef1130,026,881 - 130,027,855 (-)NCBIHuRef
CHM1_11160,065,480 - 160,066,454 (-)NCBICHM1_1
T2T-CHM13v2.01157,836,759 - 157,837,733 (-)NCBIT2T-CHM13v2.0
Or6k2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391173,986,288 - 173,987,333 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1173,983,199 - 173,989,761 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381174,158,722 - 174,159,767 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1174,155,633 - 174,162,195 (+)Ensemblmm10GRCm38
MGSCv371176,088,853 - 176,089,898 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361175,995,450 - 175,996,415 (+)NCBIMGSCv36mm8
Celera1181,262,032 - 181,263,077 (+)NCBICelera
Cytogenetic Map1H3NCBI
cM Map180.95NCBI
Or6k2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81388,721,361 - 88,722,326 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1388,721,361 - 88,722,326 (+)EnsemblGRCr8
mRatBN7.21386,186,442 - 86,190,391 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1386,185,529 - 86,190,815 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1388,700,466 - 88,701,431 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01390,100,744 - 90,101,709 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01387,285,493 - 87,286,458 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1388,089,149 - 88,090,114 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1388,300,274 - 88,301,239 (+)NCBILyon_Normotensive
Lyon_Hypertensive1388,230,805 - 88,231,770 (+)NCBILyon_Hypertensive
F344_StmMcwi1388,302,831 - 88,303,796 (+)NCBIF344_StmMcwi
Rnor_6.01392,249,759 - 92,250,724 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1392,249,759 - 92,250,724 (+)Ensemblrn6Rnor6.0
Rnor_5.01396,767,915 - 96,768,880 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41389,937,452 - 89,938,417 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1385,791,781 - 85,792,746 (+)NCBICelera
RGSC_v3.11390,126,335 - 90,127,301 (+)NCBI
Cytogenetic Map13q24NCBI
LOC100981216
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2191,147,251 - 91,148,228 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1190,891,096 - 90,892,073 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01134,058,226 - 134,059,339 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11137,849,046 - 137,850,158 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1137,849,135 - 137,850,115 (-)EnsemblpanPan2panpan1.1
OR6K2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1205,221,383 - 5,224,559 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660384,390,507 - 4,391,761 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in OR6K2
46 total Variants

Expression

RNA-SEQ Expression

endoderm
hemolymphoid system
mesenchyme
mesoderm
respiratory system
1 1 1 1 1

Sequence


Ensembl Acc Id: ENSCAFT00000018524   ⟹   ENSCAFP00000017157
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl3823,043,721 - 23,044,686 (+)Ensembl
RefSeq Acc Id: NM_001388896   ⟹   NP_001375825
RefSeq Status: INFERRED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha3823,065,822 - 23,066,787 (+)NCBI
ROS_Cfam_1.03823,175,283 - 23,176,248 (+)NCBI
UMICH_Zoey_3.13822,938,358 - 22,939,322 (+)NCBI
UNSW_CanFamBas_1.03823,473,085 - 23,474,050 (+)NCBI
UU_Cfam_GSD_1.03823,904,351 - 23,905,316 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001375825 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AEN80214 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000017157.3
  ENSCAFP00030041903.1
  ENSCAFP00040030361.1
Ensembl Acc Id: ENSCAFP00000017157   ⟸   ENSCAFT00000018524
RefSeq Acc Id: NP_001375825   ⟸   NM_001388896
- UniProtKB: G3FJB8 (UniProtKB/TrEMBL),   A0A8C0PHK4 (UniProtKB/TrEMBL)
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000011678 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030025936 UniProtKB/TrEMBL
  ENSCAFG00040018857 UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000018524.3 UniProtKB/TrEMBL
  ENSCAFT00030047900.1 UniProtKB/TrEMBL
  ENSCAFT00040034868.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
  Olfactory_GPCR1 UniProtKB/TrEMBL
NCBI Gene LOC610561 ENTREZGENE
PANTHER G-PROTEIN COUPLED RECEPTOR UniProtKB/TrEMBL
  OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8C0PHK4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0T3X5_CANLF UniProtKB/TrEMBL
  G3FJB8 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:97093 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-02-18 OR6K2  olfactory receptor family 6 subfamily K member 2  LOC610561  olfactory receptor 6K2  Symbol and/or name change 5135510 APPROVED
2017-09-12 LOC610561  olfactory receptor 6K2    olfactory receptor 6K2-like  Symbol and/or name change 5135510 APPROVED