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Gene: SMARCC1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1) Canis lupus familiaris

Analyze

Symbol:

SMARCC1

Name:

SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1 (Ensembl:SWI/SNF related BAF chromatin remodeling complex subunit C1)

RGD ID:

12323461

Description:

ENCODES a protein that exhibits chromatin binding (inferred); INVOLVED IN animal organ morphogenesis (ortholog); insulin receptor signaling pathway (ortholog); negative regulation of proteasomal ubiquitin-dependent protein catabolic process (ortholog); PARTICIPATES IN SWI/SNF family mediated chromatin remodeling pathway; ASSOCIATED WITH adenocarcinoma (ortholog); Animal Disease Models (ortholog); autism spectrum disorder (ortholog); FOUND IN cytoplasm (inferred); nBAF complex (inferred); npBAF complex (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

SWI/SNF complex subunit SMARCC1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	41,165,593 - 41,337,237 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	41,165,522 - 41,335,917 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	41,082,515 - 41,253,825 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	41,648,770 - 41,820,697 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	41,648,442 - 41,819,332 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	40,890,912 - 41,062,805 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	41,292,573 - 41,463,274 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	41,572,012 - 41,744,003 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

adenocarcinoma (ISO)

Animal Disease Models (ISO)

autism spectrum disorder (ISO)

colorectal adenoma (ISO)

colorectal cancer (ISO)

colorectal carcinoma (ISO)

Congenital Hydrocephalus 5 (ISO)

DNA Repair-Deficiency Disorders (ISO)

Experimental Liver Cirrhosis (ISO)

genetic disease (ISO)

hepatocellular carcinoma (ISO)

hydrocephalus (ISO)

lung adenocarcinoma (ISO)

Lung Neoplasms (ISO)

renal cell carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

animal organ morphogenesis (ISO)

chromatin organization (IEA)

chromatin remodeling (IEA)

DNA-templated transcription (IEA)

insulin receptor signaling pathway (ISO)

negative regulation of proteasomal ubiquitin-dependent protein catabolic process (ISO)

nucleosome disassembly (IEA)

positive regulation of DNA-templated transcription (IBA,IEA)

positive regulation of transcription by RNA polymerase II (ISO)

prostate gland development (ISO)

regulation of DNA-templated transcription (IEA)

Cellular Component

cytoplasm (IEA)

nBAF complex (IBA,IEA)

npBAF complex (IBA,IEA)

nuclear lumen (IEA)

nucleoplasm (IEA)

nucleus (IEA)

SWI/SNF complex (IBA,IEA)

XY body (IEA)

Molecular Function

chromatin binding (IEA)

histone binding (IBA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

SWI/SNF family mediated chromatin remodeling pathway (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

SMARCC1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	41,165,593 - 41,337,237 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	41,165,522 - 41,335,917 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	41,082,515 - 41,253,825 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	41,648,770 - 41,820,697 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	41,648,442 - 41,819,332 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	40,890,912 - 41,062,805 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	41,292,573 - 41,463,274 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	41,572,012 - 41,744,003 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

SMARCC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	47,585,269 - 47,781,893 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	47,585,269 - 47,782,106 (-)	Ensembl			hg38	GRCh38
GRCh37	3	47,626,759 - 47,823,383 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	47,602,391 - 47,798,410 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	3	47,602,390 - 47,798,410	NCBI
Celera	3	47,569,167 - 47,765,120 (-)	NCBI		Celera
Cytogenetic Map	3	p21.31	NCBI
HuRef	3	47,673,262 - 47,870,748 (-)	NCBI		HuRef
CHM1_1	3	47,577,371 - 47,773,509 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	47,604,348 - 47,801,082 (-)	NCBI		T2T-CHM13v2.0

Smarcc1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	109,961,129 - 110,069,773 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	109,946,776 - 110,069,246 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	110,132,024 - 110,240,178 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	110,117,708 - 110,240,178 (+)	Ensembl			mm10	GRCm38
MGSCv37	9	110,034,528 - 110,142,682 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	109,977,231 - 110,084,487 (+)	NCBI		MGSCv36	mm8
Celera	9	109,860,346 - 109,968,637 (+)	NCBI		Celera
Cytogenetic Map	9	F2	NCBI
cM Map	9	59.87	NCBI

Smarcc1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	118,986,917 - 119,093,161 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	118,989,516 - 119,093,152 (+)	Ensembl				GRCr8
mRatBN7.2	8	110,111,097 - 110,214,734 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	110,111,122 - 110,214,720 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	115,726,774 - 115,826,192 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	113,925,963 - 114,025,381 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	111,768,732 - 111,868,168 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	8	119,875,146 - 119,979,356 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	8	121,980,092 - 122,084,303 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	8	120,469,797 - 120,574,008 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	8	111,870,861 - 111,974,355 (+)	NCBI		F344_StmMcwi
Rnor_6.0	8	118,206,678 - 118,326,264 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	118,206,698 - 118,325,537 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	117,561,593 - 117,677,011 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	114,484,491 - 114,609,850 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	109,398,958 - 109,497,187 (+)	NCBI		Celera
RGSC_v3.1	8	114,503,969 - 114,628,505 (+)	NCBI
Cytogenetic Map	8	q32	NCBI

Smarcc1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955420	24,593,830 - 24,729,108 (+)	Ensembl
ChiLan1.0	NW_004955420	24,594,057 - 24,729,108 (+)	NCBI	ChiLan1.0	ChiLan1.0

SMARCC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	47,544,150 - 47,739,357 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	47,548,917 - 47,744,126 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	47,487,948 - 47,683,623 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	48,587,903 - 48,781,325 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	48,590,221 - 48,781,248 (-)	Ensembl			panPan2	panpan1.1

Smarcc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	201,708,506 - 201,858,219 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936596	1,255,054 - 1,408,038 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936596	1,257,723 - 1,407,358 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SMARCC1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	30,409,983 - 30,576,327 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	30,409,979 - 30,576,270 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

SMARCC1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	8,987,936 - 9,167,689 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	8,987,012 - 9,134,946 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	157,946,014 - 158,135,854 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Smarcc1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	73,696,749 - 73,856,082 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624730	73,696,734 - 73,856,082 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Smarcc1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	8	100,732,149 - 100,833,651 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in SMARCC1
1377 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_014122183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014122184	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038427927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038503590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038566605	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038630753	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_533845	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000058	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000020868 ⟹ ENSCAFP00000019375

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	20	41,165,522 - 41,335,917 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000068957 ⟹ ENSCAFP00000048300

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	20	41,165,522 - 41,335,917 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000077525 ⟹ ENSCAFP00000045781

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	20	41,165,522 - 41,334,266 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000084634 ⟹ ENSCAFP00000044427

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	20	41,165,522 - 41,335,917 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000085632 ⟹ ENSCAFP00000055611

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	20	41,165,522 - 41,335,917 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00000089448 ⟹ ENSCAFP00000046036

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	20	41,165,522 - 41,335,917 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845014880 ⟹ ENSCAFP00845011535

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	20	41,648,442 - 41,819,332 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845015000 ⟹ ENSCAFP00845011633

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	20	41,648,442 - 41,817,729 (+)	Ensembl

RefSeq Acc Id:

XM_038427927 ⟹ XP_038283855

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	20	41,648,770 - 41,820,697 (+)	NCBI

RefSeq Acc Id:

XM_038503590 ⟹ XP_038359518

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	20	40,890,912 - 41,062,805 (+)	NCBI

RefSeq Acc Id:

XM_038566605 ⟹ XP_038422533

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	20	41,572,012 - 41,744,003 (+)	NCBI

RefSeq Acc Id:

XM_038630753 ⟹ XP_038486681

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	20	41,292,573 - 41,463,274 (+)	NCBI

RefSeq Acc Id:

XM_533845 ⟹ XP_533845

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	20	41,165,593 - 41,337,237 (+)	NCBI
Dog10K_Boxer_Tasha	20	41,082,515 - 41,253,825 (+)	NCBI

Sequence:

show sequence

ACGACGGACGGCGACGATGTCCGCGGCGGCAAGCGGCGGCGGGCTGGGGGCGGCGGCGGGCGCC
GCGGGCGCAGGAGGCGCGGCGGCGGCCGCGGGCCTGGCGGTTTATCGGCGGAAGGACGGTGGCC
CGGCCAGCAAGTTTTGGGAGAGCCCGGAGACGGTGTCCCAGCTGGATTCGGTGCGGGTCTGGCT
GGGCAAGCACTACAAGAAGTATGTTCATGCGGATGCTCCTACCAATAAAACACTGGCTGGGCTA
GTGGTACAGCTTCTTCAGTTCCAGGAAGATGCCTTTGGGAAGCATGTCACCAATCCGGCCTTCA
CCAAACTCCCGGCAAAATGTTTCATGGATTTCAAAGCTGGAGGAACCTTGTGTCACATTCTTGG
GGCTGCTTACAAGTATAAAAATGAACAAGGATGGCGGAGGTTTGATCTACAGAATCCATCTCGA
ATGGATCGGAATGTTGAAATGTTTATGAACATTGAAAAAACTTTGGTGCAGAGCAATTGTCTGA
CCAGACCCAACATCTACCTCATTCCAGACATTGATCTGAAGTTGGCTAACAAATTGAAAGATAT
TATCAAACGACATCAGGGGACTTTTACTGATGAGAAGTCAAAAGCTTCCCACCACATTTATCCA
TATCCTTCCTCACAAGAGGATGAAGAATGGTTGAGACCCGTGATGAGAAAAGATAAGCAGGTGT
TAGTGCATTGGGGGTTTTACCCAGACAGCTATGATACTTGGGTCCATAGTAATGATGTTGATGC
AGAAATTGAAGATCCACCAATTCCAGAAAAGCCATGGAAGGTTCATGCGAAGTGGATTTTGGAC
ACTGATGTTTTCAATGAATGGATGAATGAGGAGGATTATGAGGTAGACGAGAACAGGAAGCCTG
TGAGCTTTCGTCAGCGAATTTCAACAAAGAATGAAGAGCCAGTCAGAAGTCCAGAGAGAAGAGA
TAGGAAAGCATCAGCTAATGCTCGAAAGAGGAAACATTCACCTTCCCCTCCACCTCCTACACCC
ACAGAATCCCGGAAGAAGAGTGGAAAGAAAGGTCAAGCTAGTCTCTATGGGAAGCGCAGAAGTC
AAAAAGAGGAAGATGAGCAAGAAGATCTTACCAAGGACATGGAAGACCCAACACCGGTACCCAA
CATAGAGGAAGTGGTGCTTCCAAAAAATGTGAACCCAAAGAAGGACAGTGAAAATACACCTGTT
AAAGGAGGAACTGTAGCAGATCTAGATGAGCAGGATGAAGAAACAGTCACAACAGGAGGAAAGG
AAGATGACGATCCTAGCAAAGGTGATCAGAGTCGCTCACTTGACCCTGGAGAAGATAATGTGAC
AGAGCAGACCAATCACATTATTATTCCTAGCTATGCATCTTGGTTTGATTACAACTGTATTCAC
GTGATTGAACGGCGTGCTCTTCCTGAGTTTTTCAATGGAAAAAACAAATCCAAGACTCCAGAAA
TATACTTGGCATATCGAAATTTTATGATTGACACATATCGCCTAAACCCACAAGAGTATTTAAC
CAGCACTGCTTGTCGGAGGAACTTGACTGGAGACGTGTGTGCTGTGATGAGGGTTCATGCCTTT
TTAGAGCAGTGGGGGCTTGTTAATTACCAAGTGGATCCAGAAAGTCGACCCATGGCAATGGGAC
CTCCTCCTACTCCTCATTTTAATGTGTTAGCTGATACCCCCTCTGGGCTTGTGCCTCTACATCT
TCGATCACCTCAGGTCCCTGCTGCTCAGCAGATGTTAAATTTTCCTGAGAAGAACAAGGAGAAA
CCAATTGATTTGCAGAACTTTGGTCTTCGCACTGACATTTACTCCAAGAAAACCTTAGCAAAGA
GTAAAGGTGCTAGTGCCGGAAGAGAATGGACTGAACAGGAGACCCTCCTGCTCCTGGAGGCCCT
GGAGATGTACAAGGATGATTGGAACAAAGTGTCAGAGCACGTCGGAAGTCGTACTCAGGATGAA
TGCATCCTCCACTTTCTGAGGCTTCCTATTGAGGACCCATACCTTGAGAATTCGGATGCTTCCC
TGGGGCCCCTGGCCTACCAGCCTGTCCCTTTCAGTCAGTCTGGAAACCCAGTCATGAGCACTGT
TGCTTTTTTGGCATCTGTGGTGGACCCTCGTGTGGCATCTGCTGCAGCAAAAGCAGCTTTGGAG
GAGTTTTCTCGGGTCCGAGAGGAGGTCCCATTGGAATTGGTTGAAGCTCATGTCAAGAAAGTAC
AAGAAGCAGCACGAGCCTCTGGGAAAGTGGATCCCACCTACGGCCTGGAAAGCAGCTGTATTGC
AGGCACAGGACCCGATGAGCCAGAGAAACTTGAAGGAGCTGAAGAGGAAAAAATGGAAGCAGAT
ACTGATGGTCAGCATCCTGAAAAGGCAGAAAACAAAGGGGAAAATGAAACAGATGAAGGTGATA
AAGCACAAGATGGAGAAAATGAAAAAAATAGTGAGAAGGAGCAGGACAGTGAAGTTAGTGAGGA
TACTAAATCAGAAGAAAAGGAAACTGAGGAGAACAAGGAACTCACTGATACTTGTAAAGAAAGA
GAAAGCGATCTCGGGAAGAAGAAAGTAGAGCACGAAATTTCCGAAGGAAATGTAGCCACGGCCG
CAGCAGCTGCTCTTGCCTCCGCTGCAACCAAAGCCAAGCACCTGGCTGCTGTGGAAGAGAGAAA
GATCAAATCTCTAGTGGCCCTCCTGGTTGAGACACAGATGAAGAAACTGGAGATCAAACTTCGA
CATTTTGAGGAGCTGGAAACTATCATGGACAGAGAAAAGGAGGCTTTAGAACAACAGAGGCAGC
AGCTGCTCACTGAACGCCAGAACTTCCACATGGAACAGCTGAAATACGCCGAATTGCGAGCCCG
ACAGCAAATGGAACAGCAGCAGCATGGGCAGAACCCTCAGCAGGCACACCAGCACTCAGGAGGA
CCTAGCCTGGCACCACTCGGAGCAGCAGGGCACCCTGGCATGATGCCTCATCAGCAGCCCCCTC
CCTACCCTCTGATGCACCACCAGATGCCACCACCTCATCCACCGCAGCCAGGTCAGATGCCAGG
TCCAGGTTCCATGATCCCTGGGCAACCCATTCCAGGCCGCATGATTCCCACTGTTGCAGCCAAC
ATCCACCCCCCTGGGAGTGGCCCAGCCGCTCCTGGTATGCCTCCAATGCCAGGAAACATCTTAG
GACCCCGGGTACCACTCACGGCACCTAATGGCATGTATGCCCCTCCGCCGCAGCAGCAGCAGCC
GCCGCCACCACCACCGCCTGCAGATGGAGTCCCTCCGCCTCCTGCTCCAGGCCCTCCAGCGTCG
GCGGCCCCCTAGCCTGGAAGACGGGGACAGCGTCCACACCCAGCGCCGCCAGCTGCCGGGCAGA
TGATGAGACTTGAGTTCCTCAGCTTCCTTGGGTTTCTTTTAGGATTTTTCTTCTCGCGGCCCCA
AGCACGCATCCCATATTTCCCTGTTCCTCTTGCCAACCCCTCTCCGTGCTCCCACACCTCTTGT
GTTAGGTCCTCTGCCGGCCTGCCGGGAGGCGGGGAGCCTGCAGTGACAGTGCGCCCTGGTCATC
CTAATGGTAACCTGCGTCCCCCCCCCCCCCCCCATCCTGGTGTGGGGTATACTGACAGTTTCTC
TGCAGGTCCTATCAACATTCGAATTTTATGTCTATTGTTTTTGCTCTCCTGCAGTTTTTGGCTT
TGTCTTATGCTTATGTGGATAATGCTTTATAATCATTATGTTTTCTTTTTTCTTTTGTCATTGT
TGCTTTAAATGGGAGCATCCTAAGTTCATAGGAACCAAAAAATGGTGATGGGCAGAGGGAATAG
CCAGAGGGGACAAACCTAAAGGCATTATAAGTGACCTTATTTCTGCTAATCTGAGCTAAGATTG
GTGCTGATGGTGAAGTTGCATGAGACTTTCGCCCCACATAGACACACCAAAATTCAAAGAGATG
GGGACGGGACCCCACTGATTTTATTCCTGGTGAGGAATGTGAGGACCTCCACCCTGTGTGGCAG
AACACGCCCCTTTAGTCCCCGGTAGGGGTATGCACAAGCATTAGAGCAGACCCACTCCTTCCCC
AGGCCCACCGATTCTGGCTTTCTATGCAGGTGCTTCGTTGGATTAGGAGTGGGGCTTGGGGGAG
GCATTCCTTTGTTCCCTAGACTAGCCAGGAACATTTTAAGAGCCTATGGCAATGACTACCCAGT
GAGTCTAGTCCACTAGTCACTGCTTTGTATTCATTCTTTGCCCCGCCTTTAAAAAAAAAAAAAA
AAAAAAACTCTAAAACGGGAAAAAAAAAAGTGAGTAGATAGTGCTAAACATTTTAGCTCATGGA
AGTTGGTTAGGATTGGCTGGGGGTTCAAGTCCCCAAACTACCTCTTGCAGTCCAGGGTGAGTGG
GGTTTAGTGAAGCGGTACTTTAGGTTTGGGATGGGATTGGAGAAGTGGGGCAGGATCAAGGGCC
TCTCGTACCTTCTCTCTTCCCTTCCTGAGATCTCACATTCCATCTGTCGCAAGGTTATCAGGAA
GATTCTGGGGGCACCAAGGAACTCAGTTGGCAATCAGAGCATCATGCTTTGAACTTTGGGGTAC
TCAGACTGGGAGATCAGAATGCCATTCCAGATGAGGAGCCACAAAAATGCCTTAACTTGAGCTC
ATTTCTACCCCTGCTGATGAATGACTTGAGAATTCTTGGTTTTCTCTTCTTGTCCTTCCTCCGT
CCCCTCTATCCTTCCATGGATGGGGGACGGCTGTGTTTGGTGGAGCTTGATTTCCAAAGTACCT
GGCCTCTTCACATCACATTTTCAAGTGGCAGTTTCATTATTTAGAATGCAAAGGAACACCTTTT
GGATATCTTTTTCTATATATTCTGTAAAGCTTTACATAAGAGAGGGTATAGGGAGGTGTTTGTA
AAACACCTCAGTTCTTTTTTCCTTAGTATCAGAAAGCAAAAAATAAATAAATAAAACCACAATT
AAGATTTGCCTTTCAAACCCTCAGGTGTTGCCTCTACCCAGGTGGCCCTGGTCACCATCAGAAT
ACTGGAGCCAAGGAGACCTTGTTCCGTGTGTGTGTGTGTGTGTTCTGGACTCTTGGAGTGGAAA
TGAGCTTGTTCCTGCTGGAGTTTAGTTCCAATGCATTTGCCTCCAGAAAGATCCCAGTGCCTTT
TGACAATGGCCAGGGTTTTCCCTCTTTCCTGCCAGTCTTTCCCAAAGGAAACGCATTCCAAATA
CTTATCTTTTCCACTGGGGTCTTAGAAAGAAAATGGAATTCTGGTTCATACTGTGGTCCCTTGT
AACCTCAGGTCTTTAACGTGATCACTTTCAAATTTAAAAGATCCAGGTGGAAATATTTTTACTA
TGCTGGTAACAATTCTACAGAATACCTGAATTCTTAACACTGTTATGTTTCAATATAAGTGGTG
ACTTTTTCTTTTCATGTCTTTGATCTGGTTTCGTTCCTGTAATACAACCACCCAATTTGGGGGG
GGTGGGGGGAATAATACGTGGTTTTTGTACAAATCTGTTTCTCAGTGTGTTGTTATTTTGGAGA
AACGAAGGGAGGGAGTTTTGGGAGATGGAGGAAATTGGATCAAGAAGACCTAATCTCCCTCTTT
TTCATCGAATAAATGGAACATTTCTGGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_038283855	(Get FASTA)	NCBI Sequence Viewer
	XP_038359518	(Get FASTA)	NCBI Sequence Viewer
	XP_038422533	(Get FASTA)	NCBI Sequence Viewer
	XP_038486681	(Get FASTA)	NCBI Sequence Viewer
	XP_533845	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000019375.5
	ENSCAFP00000045781.2
	ENSCAFP00030037012.1
	ENSCAFP00030037138.1
	ENSCAFP00030037214.1
	ENSCAFP00030037290.1
	ENSCAFP00040040209.1
	ENSCAFP00040040248.1
	ENSCAFP00845011535
	ENSCAFP00845011535.1
	ENSCAFP00845011633.1

RefSeq Acc Id:

XP_533845 ⟸ XM_533845

- UniProtKB:

A0A8C0P6B2 (UniProtKB/TrEMBL), A0A8I3RW34 (UniProtKB/TrEMBL), A0A8C0PD71 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSAAASGGGLGAAAGAAGAGGAAAAAGLAVYRRKDGGPASKFWESPETVSQLDSVRVWLGKHYK
KYVHADAPTNKTLAGLVVQLLQFQEDAFGKHVTNPAFTKLPAKCFMDFKAGGTLCHILGAAYKY
KNEQGWRRFDLQNPSRMDRNVEMFMNIEKTLVQSNCLTRPNIYLIPDIDLKLANKLKDIIKRHQ
GTFTDEKSKASHHIYPYPSSQEDEEWLRPVMRKDKQVLVHWGFYPDSYDTWVHSNDVDAEIEDP
PIPEKPWKVHAKWILDTDVFNEWMNEEDYEVDENRKPVSFRQRISTKNEEPVRSPERRDRKASA
NARKRKHSPSPPPPTPTESRKKSGKKGQASLYGKRRSQKEEDEQEDLTKDMEDPTPVPNIEEVV
LPKNVNPKKDSENTPVKGGTVADLDEQDEETVTTGGKEDDDPSKGDQSRSLDPGEDNVTEQTNH
IIIPSYASWFDYNCIHVIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACR
RNLTGDVCAVMRVHAFLEQWGLVNYQVDPESRPMAMGPPPTPHFNVLADTPSGLVPLHLRSPQV
PAAQQMLNFPEKNKEKPIDLQNFGLRTDIYSKKTLAKSKGASAGREWTEQETLLLLEALEMYKD
DWNKVSEHVGSRTQDECILHFLRLPIEDPYLENSDASLGPLAYQPVPFSQSGNPVMSTVAFLAS
VVDPRVASAAAKAALEEFSRVREEVPLELVEAHVKKVQEAARASGKVDPTYGLESSCIAGTGPD
EPEKLEGAEEEKMEADTDGQHPEKAENKGENETDEGDKAQDGENEKNSEKEQDSEVSEDTKSEE
KETEENKELTDTCKERESDLGKKKVEHEISEGNVATAAAAALASAATKAKHLAAVEERKIKSLV
ALLVETQMKKLEIKLRHFEELETIMDREKEALEQQRQQLLTERQNFHMEQLKYAELRARQQMEQ
QQHGQNPQQAHQHSGGPSLAPLGAAGHPGMMPHQQPPPYPLMHHQMPPPHPPQPGQMPGPGSMI
PGQPIPGRMIPTVAANIHPPGSGPAAPGMPPMPGNILGPRVPLTAPNGMYAPPPQQQQPPPPPP
PADGVPPPPAPGPPASAAP

hide sequence

Ensembl Acc Id:

ENSCAFP00000048300 ⟸ ENSCAFT00000068957

Ensembl Acc Id:

ENSCAFP00000019375 ⟸ ENSCAFT00000020868

Ensembl Acc Id:

ENSCAFP00000044427 ⟸ ENSCAFT00000084634

Ensembl Acc Id:

ENSCAFP00000045781 ⟸ ENSCAFT00000077525

Ensembl Acc Id:

ENSCAFP00000046036 ⟸ ENSCAFT00000089448

Ensembl Acc Id:

ENSCAFP00000055611 ⟸ ENSCAFT00000085632

RefSeq Acc Id:

XP_038359518 ⟸ XM_038503590

RefSeq Acc Id:

XP_038486681 ⟸ XM_038630753

RefSeq Acc Id:	XP_038283855 ⟸ XM_038427927
- UniProtKB:	A0A8C0P6B2 (UniProtKB/TrEMBL), A0A8I3RW34 (UniProtKB/TrEMBL), A0A8C0PD71 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038422533 ⟸ XM_038566605
- UniProtKB:	A0A8C0P6B2 (UniProtKB/TrEMBL), A0A8C0PD71 (UniProtKB/TrEMBL), A0A8I3RW34 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845011633 ⟸ ENSCAFT00845015000

Ensembl Acc Id:

ENSCAFP00845011535 ⟸ ENSCAFT00845014880

Protein Domains

Chromo Myb-like SANT SWIRM

Promoters

RGD ID:

13686894

Promoter ID:

EPDNEW_C4962

Type:

multiple initiation site

Name:

SMARCC1_1

Description:

SWI/SNF related, matrix associated, actin dependent regulatorof chromatin subfamily c member 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	20	41,165,547 - 41,165,607	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000013136	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030023066	UniProtKB/TrEMBL
	ENSCAFG00040024728	UniProtKB/TrEMBL
	ENSCAFG00845008451	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000020868.6	UniProtKB/TrEMBL
	ENSCAFT00000077525.2	UniProtKB/TrEMBL
	ENSCAFT00030042415.1	UniProtKB/TrEMBL
	ENSCAFT00030042569.1	UniProtKB/TrEMBL
	ENSCAFT00030042656.1	UniProtKB/TrEMBL
	ENSCAFT00030042739.1	UniProtKB/TrEMBL
	ENSCAFT00040046075.1	UniProtKB/TrEMBL
	ENSCAFT00040046118.1	UniProtKB/TrEMBL
	ENSCAFT00845014880	ENTREZGENE
	ENSCAFT00845014880.1	UniProtKB/TrEMBL
	ENSCAFT00845015000.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/TrEMBL
	Homeodomain-like	UniProtKB/TrEMBL
InterPro	BRCT_dom_sf	UniProtKB/TrEMBL
	Chromo/chromo_shadow_dom	UniProtKB/TrEMBL
	Homeobox-like_sf	UniProtKB/TrEMBL
	MARR_BRCT_CHROMO	UniProtKB/TrEMBL
	SANT/Myb	UniProtKB/TrEMBL
	SANT_dom	UniProtKB/TrEMBL
	SMARCC_C	UniProtKB/TrEMBL
	SMARCC_N	UniProtKB/TrEMBL
	SWIRM	UniProtKB/TrEMBL
	SWIRM-assoc	UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/TrEMBL
NCBI Gene	SMARCC1	ENTREZGENE
PANTHER	CHONDROITIN SULFATE PROTEOGLYCAN 5	UniProtKB/TrEMBL
	CHONDROITIN SULFATE PROTEOGLYCAN 5 -RELATED	UniProtKB/TrEMBL
Pfam	Myb_DNA-binding	UniProtKB/TrEMBL
	SWIRM	UniProtKB/TrEMBL
	SWIRM-assoc_1	UniProtKB/TrEMBL
	SWIRM-assoc_2	UniProtKB/TrEMBL
	SWIRM-assoc_3	UniProtKB/TrEMBL
PROSITE	MARR_BRCT_CHROMO	UniProtKB/TrEMBL
	MYB_LIKE	UniProtKB/TrEMBL
	SANT	UniProtKB/TrEMBL
	SWIRM	UniProtKB/TrEMBL
SMART	CHROMO	UniProtKB/TrEMBL
	SANT	UniProtKB/TrEMBL
Superfamily-SCOP	SSF46689	UniProtKB/TrEMBL
	SSF52113	UniProtKB/TrEMBL
UniProt	A0A8C0P5D0_CANLF	UniProtKB/TrEMBL
	A0A8C0P6B2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0PD71	ENTREZGENE, UniProtKB/TrEMBL
	A0A8C0TVA7_CANLF	UniProtKB/TrEMBL
	A0A8I3RW34	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3RW51_CANLF	UniProtKB/TrEMBL
VGNC ID	VGNC:46535	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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