TFB1M (transcription factor B1, mitochondrial) - Rat Genome Database

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Gene: TFB1M (transcription factor B1, mitochondrial) Canis lupus familiaris
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Symbol: TFB1M
Name: transcription factor B1, mitochondrial
RGD ID: 12302492
Description: ENCODES a protein that exhibits DNA binding (inferred); methyltransferase activity (inferred); RNA binding (inferred); INVOLVED IN DNA-templated transcription (inferred); methylation (inferred); mitochondrial small ribosomal subunit assembly (inferred); FOUND IN mitochondrial nucleoid (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dimethyladenosine transferase 1, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1145,001,095 - 45,071,361 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl145,001,088 - 45,071,518 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha145,838,091 - 45,908,486 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0145,184,445 - 45,255,052 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl145,182,619 - 45,255,027 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1145,051,617 - 45,121,984 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0144,923,363 - 44,993,740 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0145,479,603 - 45,549,987 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TFB1M
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1145,001,095 - 45,071,361 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl145,001,088 - 45,071,518 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha145,838,091 - 45,908,486 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0145,184,445 - 45,255,052 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl145,182,619 - 45,255,027 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1145,051,617 - 45,121,984 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0144,923,363 - 44,993,740 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0145,479,603 - 45,549,987 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
TFB1M
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386155,229,871 - 155,314,484 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6155,256,134 - 155,314,493 (-)Ensemblhg38GRCh38
GRCh376155,551,005 - 155,635,618 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 366155,620,482 - 155,677,318 (-)NCBIBuild 36Build 36hg18NCBI36
Build 346155,670,910 - 155,727,731NCBI
Celera6156,313,087 - 156,369,927 (-)NCBICelera
Cytogenetic Map6q25.3NCBI
HuRef6153,139,544 - 153,197,988 (-)NCBIHuRef
CHM1_16155,839,879 - 155,897,947 (-)NCBICHM1_1
T2T-CHM13v2.06156,431,886 - 156,516,508 (-)NCBIT2T-CHM13v2.0
Tfb1m
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39173,569,119 - 3,608,064 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl173,569,531 - 3,608,056 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38173,519,250 - 3,557,796 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl173,519,256 - 3,557,781 (-)Ensemblmm10GRCm38
MGSCv37173,519,256 - 3,557,713 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36173,475,738 - 3,514,195 (-)NCBIMGSCv36mm8
Celera174,054,051 - 4,093,093 (-)NCBICelera
Cytogenetic Map17A1NCBI
cM Map172.01NCBI
Tfb1m
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8146,520,510 - 46,567,004 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl146,524,435 - 46,566,948 (-)EnsemblGRCr8
mRatBN7.2144,115,240 - 44,161,737 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl144,119,166 - 44,161,709 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx144,660,116 - 44,702,630 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0150,647,350 - 50,689,863 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0144,735,618 - 44,778,128 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd146,137,377 - 46,179,593 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive145,476,764 - 45,518,980 (-)NCBILyon_Normotensive
Lyon_Hypertensive146,638,108 - 46,680,324 (-)NCBILyon_Hypertensive
F344_StmMcwi144,914,613 - 44,956,829 (-)NCBIF344_StmMcwi
Rnor_6.0144,433,116 - 44,474,674 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl144,433,116 - 44,474,674 (-)Ensemblrn6Rnor6.0
Rnor_5.0145,762,960 - 45,804,760 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4138,513,709 - 38,556,210 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera139,753,776 - 39,795,383 (-)NCBICelera
RGSC_v3.1138,516,653 - 38,559,155 (-)NCBI
Cytogenetic Map1q11NCBI
Tfb1m
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554396,883,852 - 6,943,152 (+)Ensembl
ChiLan1.0NW_0049554396,889,432 - 6,943,152 (+)NCBIChiLan1.0ChiLan1.0
TFB1M
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25175,281,025 - 175,337,446 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16173,171,102 - 173,228,972 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06153,072,906 - 153,130,545 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16159,034,430 - 159,094,588 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6159,037,203 - 159,094,592 (-)EnsemblpanPan2panpan1.1
Tfb1m
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946140,210,776 - 140,258,128 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364897,464,663 - 7,510,123 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364897,464,550 - 7,510,108 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TFB1M
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl111,566,245 - 11,653,871 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1111,566,193 - 11,650,656 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2113,558,903 - 13,622,456 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TFB1M
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11382,823,528 - 82,877,958 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1382,823,640 - 82,877,923 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604055,194,167 - 55,253,100 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tfb1m
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247853,027,230 - 3,085,879 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247853,027,662 - 3,085,879 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Tfb1m
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12195,204,374 - 195,244,701 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in TFB1M
663 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000000895   ⟹   ENSCAFP00000000817
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl145,001,088 - 45,071,518 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845000770   ⟹   ENSCAFP00845000568
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl145,182,619 - 45,255,027 (-)Ensembl
RefSeq Acc Id: XM_038465743   ⟹   XP_038321671
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1145,051,617 - 45,121,984 (-)NCBI
RefSeq Acc Id: XM_038526410   ⟹   XP_038382338
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0145,479,603 - 45,549,987 (-)NCBI
RefSeq Acc Id: XM_038590714   ⟹   XP_038446642
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0144,923,363 - 44,993,740 (-)NCBI
RefSeq Acc Id: XM_038654507   ⟹   XP_038510435
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0145,184,445 - 45,255,052 (-)NCBI
RefSeq Acc Id: XM_533459   ⟹   XP_533459
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1145,001,095 - 45,071,361 (-)NCBI
Dog10K_Boxer_Tasha145,838,091 - 45,908,486 (-)NCBI
Sequence:
RefSeq Acc Id: XP_533459   ⟸   XM_533459
- UniProtKB: A0A8C0KMP9 (UniProtKB/TrEMBL),   A0A8C0T2B3 (UniProtKB/TrEMBL),   A0A8I3MBK7 (UniProtKB/TrEMBL),   A0A8C0MNS0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000000817   ⟸   ENSCAFT00000000895
RefSeq Acc Id: XP_038321671   ⟸   XM_038465743
RefSeq Acc Id: XP_038446642   ⟸   XM_038590714
RefSeq Acc Id: XP_038510435   ⟸   XM_038654507
- UniProtKB: A0A8C0KMP9 (UniProtKB/TrEMBL),   A0A8C0T2B3 (UniProtKB/TrEMBL),   A0A8I3MBK7 (UniProtKB/TrEMBL),   A0A8C0MNS0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038382338   ⟸   XM_038526410
- UniProtKB: A0A8C0KMP9 (UniProtKB/TrEMBL),   A0A8C0MNS0 (UniProtKB/TrEMBL),   A0A8C0T2B3 (UniProtKB/TrEMBL),   A0A8I3MBK7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845000568   ⟸   ENSCAFT00845000770
Protein Domains
Ribosomal RNA adenine methylase transferase N-

Promoters
RGD ID:13682012
Promoter ID:EPDNEW_C80
Type:single initiation site
Name:TFB1M_1
Description:transcription factor B1, mitochondrial
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1145,071,339 - 45,071,399EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000000581 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030007552 UniProtKB/TrEMBL
  ENSCAFG00040018618 UniProtKB/TrEMBL
  ENSCAFG00845000478 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000000895.5 UniProtKB/TrEMBL
  ENSCAFT00030013856.1 UniProtKB/TrEMBL
  ENSCAFT00030013924.1 UniProtKB/TrEMBL
  ENSCAFT00040034462.1 UniProtKB/TrEMBL
  ENSCAFT00845000770 ENTREZGENE
  ENSCAFT00845000770.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.8.100 UniProtKB/TrEMBL
  3.40.50.150 UniProtKB/TrEMBL
InterPro KsgA/Erm UniProtKB/TrEMBL
  rRNA_Ade_diMease-like_C UniProtKB/TrEMBL
  rRNA_Ade_Mease_Trfase_CS UniProtKB/TrEMBL
  rRNA_Ade_methylase_Trfase_N UniProtKB/TrEMBL
  rRNA_adenine_dimethylase UniProtKB/TrEMBL
  SAM-dependent_MTases UniProtKB/TrEMBL
KEGG Report cfa:476253 UniProtKB/TrEMBL
NCBI Gene TFB1M ENTREZGENE
PANTHER DIMETHYLADENOSINE TRANSFERASE 1, MITOCHONDRIAL UniProtKB/TrEMBL
  PTHR11727 UniProtKB/TrEMBL
Pfam RrnaAD UniProtKB/TrEMBL
PROSITE RRNA_A_DIMETH UniProtKB/TrEMBL
  SAM_RNA_A_N6_MT UniProtKB/TrEMBL
SMART rADc UniProtKB/TrEMBL
Superfamily-SCOP SSF53335 UniProtKB/TrEMBL
UniProt A0A8C0KMP9 ENTREZGENE
  A0A8C0MNS0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0T2B3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MBK7 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:47288 ENTREZGENE