OR5K1 (olfactory receptor family 5 subfamily K member 1) - Rat Genome Database

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Gene: OR5K1 (olfactory receptor family 5 subfamily K member 1) Canis lupus familiaris
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Symbol: OR5K1
Name: olfactory receptor family 5 subfamily K member 1
RGD ID: 12141245
Description: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. [provided by RefSeq, Jul 2008]
Type: protein-coding
RefSeq Status: INFERRED
Previously known as: LOC100856070; olfactory receptor 5K1
RGD Orthologs
Human
Mouse
Bonobo
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1335,334,643 - 5,350,995 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl335,347,148 - 5,348,074 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha335,498,246 - 5,499,214 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0335,460,592 - 5,490,337 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl335,486,519 - 5,488,214 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1335,364,111 - 5,365,079 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0335,427,217 - 5,428,185 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0335,704,261 - 5,705,229 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
OR5K1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1335,334,643 - 5,350,995 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl335,347,148 - 5,348,074 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha335,498,246 - 5,499,214 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0335,460,592 - 5,490,337 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl335,486,519 - 5,488,214 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1335,364,111 - 5,365,079 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0335,427,217 - 5,428,185 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0335,704,261 - 5,705,229 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
OR5K1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38398,463,201 - 98,472,924 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl398,463,201 - 98,472,924 (+)Ensemblhg38GRCh38
GRCh37398,182,045 - 98,191,768 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36399,671,111 - 99,672,062 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34399,671,110 - 99,672,062NCBI
Celera396,580,080 - 96,581,031 (+)NCBICelera
Cytogenetic Map3q11.2NCBI
HuRef395,560,558 - 95,561,509 (+)NCBIHuRef
CHM1_1398,151,582 - 98,152,533 (+)NCBICHM1_1
T2T-CHM13v2.03101,166,890 - 101,176,614 (+)NCBIT2T-CHM13v2.0
Or5k1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391658,617,142 - 58,618,305 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1658,615,570 - 58,620,631 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381658,796,779 - 58,797,942 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1658,795,207 - 58,800,268 (-)Ensemblmm10GRCm38
MGSCv371658,796,575 - 58,797,738 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361658,739,105 - 58,740,070 (-)NCBIMGSCv36mm8
Celera1659,080,557 - 59,081,720 (-)NCBICelera
Cytogenetic Map16C1.2NCBI
cM Map1634.83NCBI
LOC100974684
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2296,401,651 - 96,409,261 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1396,406,434 - 96,414,044 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0395,565,396 - 95,566,592 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13102,248,749 - 102,249,833 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3102,248,840 - 102,249,766 (+)EnsemblpanPan2panpan1.1
OR5K1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12282,378,779 - 82,381,602 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604184,172,814 - 84,176,248 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in OR5K1
238 total Variants

Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCAFT00000087786   ⟹   ENSCAFP00000060921
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl335,347,148 - 5,348,074 (+)Ensembl
Ensembl Acc Id: ENSCAFT00845028627   ⟹   ENSCAFP00845022530
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl335,486,519 - 5,488,214 (+)Ensembl
RefSeq Acc Id: NM_001389132   ⟹   NP_001376061
RefSeq Status: INFERRED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha335,498,246 - 5,499,214 (+)NCBI
ROS_Cfam_1.0335,486,519 - 5,487,489 (+)NCBI
UMICH_Zoey_3.1335,364,111 - 5,365,079 (+)NCBI
UNSW_CanFamBas_1.0335,427,217 - 5,428,185 (+)NCBI
UU_Cfam_GSD_1.0335,704,261 - 5,705,229 (+)NCBI
RefSeq Acc Id: XM_038444553   ⟹   XP_038300481
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0335,464,227 - 5,490,337 (+)NCBI
RefSeq Acc Id: XM_038444554   ⟹   XP_038300482
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0335,460,603 - 5,490,337 (+)NCBI
RefSeq Acc Id: XM_038444555   ⟹   XP_038300483
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0335,460,955 - 5,490,337 (+)NCBI
RefSeq Acc Id: XM_038444556   ⟹   XP_038300484
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0335,464,227 - 5,490,337 (+)NCBI
RefSeq Acc Id: XM_038444557   ⟹   XP_038300485
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0335,464,262 - 5,490,337 (+)NCBI
RefSeq Acc Id: XM_038444558   ⟹   XP_038300486
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0335,460,592 - 5,490,337 (+)NCBI
Ensembl Acc Id: ENSCAFP00000060921   ⟸   ENSCAFT00000087786
RefSeq Acc Id: NP_001376061   ⟸   NM_001389132
- UniProtKB: A0A8P0TCS6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038300486   ⟸   XM_038444558
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TJS4 (UniProtKB/TrEMBL),   A0A8P0TCS6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038300482   ⟸   XM_038444554
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TJS4 (UniProtKB/TrEMBL),   A0A8P0TCS6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038300483   ⟸   XM_038444555
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TJS4 (UniProtKB/TrEMBL),   A0A8P0TCS6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038300484   ⟸   XM_038444556
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TJS4 (UniProtKB/TrEMBL),   A0A8P0TCS6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038300481   ⟸   XM_038444553
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TJS4 (UniProtKB/TrEMBL),   A0A8P0TCS6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038300485   ⟸   XM_038444557
- Peptide Label: isoform X1
- UniProtKB: A0A8C0TJS4 (UniProtKB/TrEMBL),   A0A8P0TCS6 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845022530   ⟸   ENSCAFT00845028627
Protein Domains
G-protein coupled receptors family 1 profile


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000045351 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030019449 UniProtKB/TrEMBL
  ENSCAFG00040022136 UniProtKB/TrEMBL
  ENSCAFG00845016090 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000087786.2 UniProtKB/TrEMBL
  ENSCAFT00030035713.1 UniProtKB/TrEMBL
  ENSCAFT00040041070.1 UniProtKB/TrEMBL
  ENSCAFT00845028627.1 UniProtKB/TrEMBL
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/TrEMBL
InterPro GPCR_Rhodpsn UniProtKB/TrEMBL
  GPCR_Rhodpsn_7TM UniProtKB/TrEMBL
  Olfact_rcpt UniProtKB/TrEMBL
NCBI Gene LOC100856070 ENTREZGENE
PANTHER OLFACTORY RECEPTOR UniProtKB/TrEMBL
Pfam 7tm_4 UniProtKB/TrEMBL
PRINTS GPCRRHODOPSN UniProtKB/TrEMBL
  OLFACTORYR UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F1_2 UniProtKB/TrEMBL
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/TrEMBL
UniProt A0A8C0TJS4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3P1R6_CANLF UniProtKB/TrEMBL
  A0A8P0TCS6 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:96891 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-02-04 OR5K1  olfactory receptor family 5 subfamily K member 1  LOC100856070  olfactory receptor 5K1  Symbol and/or name change 5135510 APPROVED