IPO4 (importin 4) - Rat Genome Database

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Pathways
Gene: IPO4 (importin 4) Canis lupus familiaris
Analyze
Symbol: IPO4
Name: importin 4
RGD ID: 12094679
Description: ENCODES a protein that exhibits nuclear import signal receptor activity (inferred); nuclear localization sequence binding (inferred); small GTPase binding (inferred); INVOLVED IN intracellular protein transport (inferred); protein import into nucleus (inferred); protein localization to nucleus (inferred); ASSOCIATED WITH Animal Disease Models (ortholog); lung adenocarcinoma (ortholog); FOUND IN chromatin (inferred); cytoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: importin-4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.184,171,525 - 4,180,666 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl84,171,527 - 4,181,151 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha84,093,204 - 4,102,330 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.084,282,317 - 4,291,213 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl84,282,326 - 4,291,944 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.183,972,710 - 3,981,604 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.084,034,535 - 4,043,435 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.084,296,844 - 4,305,741 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
chromatin  (IEA)
cytoplasm  (IBA,IEA)
nucleus  (IBA,IEA)
protein-containing complex  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
IPO4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.184,171,525 - 4,180,666 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl84,171,527 - 4,181,151 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha84,093,204 - 4,102,330 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.084,282,317 - 4,291,213 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl84,282,326 - 4,291,944 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.183,972,710 - 3,981,604 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.084,034,535 - 4,043,435 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.084,296,844 - 4,305,741 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
IPO4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381424,180,219 - 24,188,816 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1424,180,219 - 24,188,990 (-)Ensemblhg38GRCh38
GRCh371424,649,425 - 24,658,022 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361423,719,265 - 23,727,964 (-)NCBIBuild 36Build 36hg18NCBI36
Build 341423,719,445 - 23,727,835NCBI
Celera144,513,896 - 4,522,596 (-)NCBICelera
Cytogenetic Map14q12NCBI
HuRef144,764,430 - 4,773,130 (-)NCBIHuRef
CHM1_11424,648,077 - 24,656,776 (-)NCBICHM1_1
T2T-CHM13v2.01418,378,529 - 18,387,126 (-)NCBIT2T-CHM13v2.0
Ipo4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391455,862,857 - 55,873,321 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1455,862,857 - 55,873,414 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381455,625,400 - 55,635,868 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1455,625,400 - 55,635,957 (-)Ensemblmm10GRCm38
MGSCv371456,244,466 - 56,254,515 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361454,579,982 - 54,589,669 (-)NCBIMGSCv36mm8
Celera1453,430,702 - 53,440,751 (-)NCBICelera
Cytogenetic Map14C3NCBI
cM Map1428.19NCBI
Ipo4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81533,087,321 - 33,097,241 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1533,087,321 - 33,097,241 (-)EnsemblGRCr8
mRatBN7.21529,117,365 - 29,127,382 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1529,117,365 - 29,127,285 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1530,963,078 - 30,972,998 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01532,110,278 - 32,120,198 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01530,352,620 - 30,362,540 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1531,786,597 - 31,796,517 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1531,491,340 - 31,501,260 (-)NCBILyon_Normotensive
Lyon_Hypertensive1531,597,828 - 31,607,748 (-)NCBILyon_Hypertensive
F344_StmMcwi1530,784,555 - 30,794,475 (-)NCBIF344_StmMcwi
Rnor_6.01534,304,425 - 34,314,552 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1534,304,425 - 34,314,345 (-)Ensemblrn6Rnor6.0
Rnor_5.01538,194,620 - 38,204,540 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41533,761,275 - 33,771,195 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1528,693,485 - 28,703,405 (-)NCBICelera
RGSC_v3.11533,777,184 - 33,786,848 (-)NCBI
Cytogenetic Map15p13NCBI
Ipo4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540936,214,704 - 36,223,714 (+)Ensembl
ChiLan1.0NW_00495540936,214,704 - 36,223,714 (+)NCBIChiLan1.0ChiLan1.0
IPO4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21525,534,528 - 25,543,428 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11424,751,020 - 24,759,927 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0144,956,456 - 4,965,305 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11423,079,910 - 23,088,610 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1423,079,910 - 23,088,610 (-)EnsemblpanPan2panpan1.1
Ipo4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864036,018,418 - 36,028,882 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936722360,250 - 373,400 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936722359,741 - 370,514 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IPO4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl775,110,082 - 75,118,733 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1775,109,844 - 75,118,739 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2780,381,676 - 80,390,037 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IPO4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1241,165,892 - 1,174,660 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl241,162,219 - 1,174,487 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603612,848,599 - 12,857,699 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ipo4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248208,352,493 - 8,361,282 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248208,352,513 - 8,361,282 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Ipo4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11269,370,921 - 69,380,463 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in IPO4
57 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000019136   ⟹   ENSCAFP00000017742
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl84,171,527 - 4,181,151 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000063591   ⟹   ENSCAFP00000050287
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl84,178,907 - 4,181,151 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000089239   ⟹   ENSCAFP00000051744
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl84,171,527 - 4,181,151 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845010442   ⟹   ENSCAFP00845008116
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl84,282,326 - 4,291,944 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845010529   ⟹   ENSCAFP00845008192
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl84,282,326 - 4,291,944 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845010626   ⟹   ENSCAFP00845008279
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl84,282,326 - 4,291,944 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845010721   ⟹   ENSCAFP00845008359
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl84,282,326 - 4,290,977 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845010846   ⟹   ENSCAFP00845008466
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl84,289,704 - 4,291,020 (-)Ensembl
RefSeq Acc Id: XM_005623264   ⟹   XP_005623321
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.184,171,525 - 4,180,666 (-)NCBI
Dog10K_Boxer_Tasha84,093,204 - 4,102,330 (-)NCBI
Sequence:
RefSeq Acc Id: XM_022421839   ⟹   XP_022277547
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.184,171,525 - 4,180,232 (-)NCBI
Dog10K_Boxer_Tasha84,093,204 - 4,101,935 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038482842   ⟹   XP_038338770
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.183,972,710 - 3,981,604 (-)NCBI
RefSeq Acc Id: XM_038482843   ⟹   XP_038338771
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.183,972,710 - 3,981,433 (-)NCBI
RefSeq Acc Id: XM_038544276   ⟹   XP_038400204
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.084,296,844 - 4,305,741 (-)NCBI
RefSeq Acc Id: XM_038544277   ⟹   XP_038400205
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.084,296,844 - 4,305,570 (-)NCBI
RefSeq Acc Id: XM_038608393   ⟹   XP_038464321
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.084,034,535 - 4,043,435 (-)NCBI
RefSeq Acc Id: XM_038608394   ⟹   XP_038464322
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.084,034,535 - 4,043,264 (-)NCBI
RefSeq Acc Id: XM_038673202   ⟹   XP_038529130
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.084,282,317 - 4,291,213 (-)NCBI
RefSeq Acc Id: XM_038673203   ⟹   XP_038529131
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.084,282,317 - 4,291,042 (-)NCBI
RefSeq Acc Id: XP_005623321   ⟸   XM_005623264
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PZF2 (UniProtKB/TrEMBL),   A0A8C0NG73 (UniProtKB/TrEMBL),   A0A8I3MZI1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_022277547   ⟸   XM_022421839
- Peptide Label: isoform X2
- UniProtKB: A0A8C0NG73 (UniProtKB/TrEMBL),   A0A8I3MZI1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000050287   ⟸   ENSCAFT00000063591
Ensembl Acc Id: ENSCAFP00000017742   ⟸   ENSCAFT00000019136
Ensembl Acc Id: ENSCAFP00000051744   ⟸   ENSCAFT00000089239
RefSeq Acc Id: XP_038338770   ⟸   XM_038482842
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038338771   ⟸   XM_038482843
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038464321   ⟸   XM_038608393
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038464322   ⟸   XM_038608394
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038529130   ⟸   XM_038673202
- Peptide Label: isoform X1
- UniProtKB: A0A8C0PZF2 (UniProtKB/TrEMBL),   A0A8C0NG73 (UniProtKB/TrEMBL),   A0A8I3MZI1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038529131   ⟸   XM_038673203
- Peptide Label: isoform X2
- UniProtKB: A0A8C0NG73 (UniProtKB/TrEMBL),   A0A8I3MZI1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038400204   ⟸   XM_038544276
- Peptide Label: isoform X1
- UniProtKB: A0A8C0NG73 (UniProtKB/TrEMBL),   A0A8C0PZF2 (UniProtKB/TrEMBL),   A0A8I3MZI1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038400205   ⟸   XM_038544277
- Peptide Label: isoform X2
- UniProtKB: A0A8C0NG73 (UniProtKB/TrEMBL),   A0A8I3MZI1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845008279   ⟸   ENSCAFT00845010626
Ensembl Acc Id: ENSCAFP00845008359   ⟸   ENSCAFT00845010721
Ensembl Acc Id: ENSCAFP00845008192   ⟸   ENSCAFT00845010529
Ensembl Acc Id: ENSCAFP00845008466   ⟸   ENSCAFT00845010846
Ensembl Acc Id: ENSCAFP00845008116   ⟸   ENSCAFT00845010442
Protein Domains
Importin N-terminal   TOG

Promoters
RGD ID:13684152
Promoter ID:EPDNEW_C2220
Type:initiation region
Name:IPO4_1
Description:importin 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.184,180,183 - 4,180,243EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000012049 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030015112 UniProtKB/TrEMBL
  ENSCAFG00040003800 UniProtKB/TrEMBL
  ENSCAFG00845005891 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000019136.6 UniProtKB/TrEMBL
  ENSCAFT00000063591.2 UniProtKB/TrEMBL
  ENSCAFT00000089239.2 UniProtKB/TrEMBL
  ENSCAFT00030028141.1 UniProtKB/TrEMBL
  ENSCAFT00030028477.1 UniProtKB/TrEMBL
  ENSCAFT00040007256.1 UniProtKB/TrEMBL
  ENSCAFT00040007311.1 UniProtKB/TrEMBL
  ENSCAFT00040007361.1 UniProtKB/TrEMBL
  ENSCAFT00845010442.1 UniProtKB/TrEMBL
  ENSCAFT00845010529.1 UniProtKB/TrEMBL
  ENSCAFT00845010626.1 UniProtKB/TrEMBL
  ENSCAFT00845010721 ENTREZGENE
  ENSCAFT00845010721.1 UniProtKB/TrEMBL
  ENSCAFT00845010846.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  HEAT_type_2 UniProtKB/TrEMBL
  Importin-beta_N UniProtKB/TrEMBL
  Importin_beta UniProtKB/TrEMBL
  TOG UniProtKB/TrEMBL
KEGG Report cfa:480260 UniProtKB/TrEMBL
NCBI Gene IPO4 ENTREZGENE
PANTHER PTHR10527 UniProtKB/TrEMBL
Pfam HEAT_EZ UniProtKB/TrEMBL
  IBN_N UniProtKB/TrEMBL
  TPR_IMB1 UniProtKB/TrEMBL
  TPR_IPO5 UniProtKB/TrEMBL
PROSITE HEAT_REPEAT UniProtKB/TrEMBL
  IMPORTIN_B_NT UniProtKB/TrEMBL
SMART IBN_N UniProtKB/TrEMBL
  TOG UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A8C0NC42_CANLF UniProtKB/TrEMBL
  A0A8C0NG73 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0PZF2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Q4J0_CANLF UniProtKB/TrEMBL
  A0A8I3MZI1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3N077_CANLF UniProtKB/TrEMBL
  A0A8I3N163_CANLF UniProtKB/TrEMBL
  A0A8I3N1K4_CANLF UniProtKB/TrEMBL
  A0A8I3N3F9_CANLF UniProtKB/TrEMBL
  A0A8P0NE58_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:42065 ENTREZGENE