SALL3 (spalt like transcription factor 3) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: SALL3 (spalt like transcription factor 3) Canis lupus familiaris
Analyze
Symbol: SALL3
Name: spalt like transcription factor 3
RGD ID: 12094080
Description: ENCODES a protein that exhibits DNA binding (inferred); metal ion binding (inferred); zinc ion binding (inferred); INVOLVED IN forelimb morphogenesis (ortholog); hindlimb morphogenesis (ortholog); negative regulation of smoothened signaling pathway (ortholog); ASSOCIATED WITH Burkitt lymphoma (ortholog); Craniofacial Abnormalities (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sal-like 3; sal-like protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.111,413,991 - 1,421,516 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl11,416,390 - 1,435,326 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha12,419,588 - 2,438,630 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.011,215,664 - 1,234,710 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl11,217,017 - 1,234,659 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.111,268,216 - 1,287,250 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.011,214,475 - 1,233,517 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.011,385,751 - 1,404,801 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
SALL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.111,413,991 - 1,421,516 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl11,416,390 - 1,435,326 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha12,419,588 - 2,438,630 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.011,215,664 - 1,234,710 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl11,217,017 - 1,234,659 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.111,268,216 - 1,287,250 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.011,214,475 - 1,233,517 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.011,385,751 - 1,404,801 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
SALL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381878,979,818 - 78,998,969 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1878,979,818 - 79,002,677 (+)Ensemblhg38GRCh38
GRCh371876,739,818 - 76,758,969 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361874,841,263 - 74,859,182 (+)NCBIBuild 36Build 36hg18NCBI36
Build 341874,841,262 - 74,859,182NCBI
Celera1873,515,295 - 73,533,238 (+)NCBICelera
Cytogenetic Map18q23NCBI
HuRef1873,383,851 - 73,390,883 (+)NCBIHuRef
CHM1_11876,735,495 - 76,754,188 (+)NCBICHM1_1
T2T-CHM13v2.01879,214,396 - 79,233,545 (+)NCBIT2T-CHM13v2.0
Sall3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391881,010,204 - 81,030,236 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1881,009,591 - 81,029,986 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381880,966,989 - 80,987,021 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1880,966,376 - 80,986,771 (-)Ensemblmm10GRCm38
MGSCv371881,163,098 - 81,183,317 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361881,128,418 - 81,148,637 (-)NCBIMGSCv36mm8
Celera1882,072,332 - 82,092,499 (-)NCBICelera
Cytogenetic Map18E3NCBI
cM Map1854.11NCBI
Sall3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81876,680,997 - 76,700,905 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1876,681,005 - 76,700,905 (-)EnsemblGRCr8
mRatBN7.21874,406,066 - 74,425,974 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1874,407,560 - 74,426,789 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1876,511,277 - 76,517,554 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01877,180,597 - 77,186,874 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01875,024,901 - 75,031,169 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1876,091,344 - 76,111,221 (-)NCBIDahl_SR_JrHsd
Lyon_Normotensive1876,362,098 - 76,382,015 (-)NCBILyon_Normotensive
Lyon_Hypertensive1876,542,222 - 76,562,099 (-)NCBILyon_Hypertensive
F344_StmMcwi1876,161,442 - 76,181,347 (-)NCBIF344_StmMcwi
Rnor_6.01877,572,200 - 77,591,710 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1877,573,702 - 77,579,969 (-)Ensemblrn6Rnor6.0
Rnor_5.01876,676,425 - 76,694,411 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41877,852,386 - 77,858,653 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1873,064,077 - 73,070,344 (-)NCBICelera
RGSC_v3.11877,907,213 - 77,943,580 (-)NCBI
Cytogenetic Map18q12.3NCBI
Sall3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540262,157,970 - 62,163,057 (+)Ensembl
ChiLan1.0NW_00495540262,157,988 - 62,163,977 (+)NCBIChiLan1.0ChiLan1.0
SALL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21796,538,861 - 96,561,813 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11882,231,488 - 82,254,437 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01872,381,249 - 72,403,789 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11875,602,465 - 75,620,927 (+)NCBIPanPan1.1PanPan1.1panPan2
Sall3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494415,580,440 - 15,601,511 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936616901,076 - 922,641 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936616903,220 - 922,635 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SALL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1146,252,155 - 146,273,906 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11146,251,591 - 146,273,778 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21161,848,298 - 161,853,448 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SALL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1181,154,033 - 1,174,030 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl181,156,502 - 1,173,946 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606024,868,578 - 24,891,300 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Sall3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248061,435,617 - 1,454,779 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248061,432,771 - 1,454,794 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Sall3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11551,252,054 - 51,269,047 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in SALL3
52 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
4 5 2 22 22 15 6 6 6 5 26 15 12 14 9

Sequence


Ensembl Acc Id: ENSCAFT00000000017   ⟹   ENSCAFP00000000016
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl11,416,390 - 1,435,326 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845000294   ⟹   ENSCAFP00845000205
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl11,217,017 - 1,234,659 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845000298   ⟹   ENSCAFP00845000207
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl11,217,017 - 1,234,659 (-)Ensembl
RefSeq Acc Id: XM_038463811   ⟹   XP_038319739
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
Dog10K_Boxer_Tasha12,419,588 - 2,438,630 (-)NCBI
RefSeq Acc Id: XM_038465136   ⟹   XP_038321064
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.111,268,216 - 1,287,250 (-)NCBI
RefSeq Acc Id: XM_038525737   ⟹   XP_038381665
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.011,385,751 - 1,404,801 (-)NCBI
RefSeq Acc Id: XM_038590030   ⟹   XP_038445958
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.011,214,475 - 1,233,517 (-)NCBI
RefSeq Acc Id: XM_038653859   ⟹   XP_038509787
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.011,215,664 - 1,234,710 (-)NCBI
Ensembl Acc Id: ENSCAFP00000000016   ⟸   ENSCAFT00000000017
RefSeq Acc Id: XP_038321064   ⟸   XM_038465136
RefSeq Acc Id: XP_038445958   ⟸   XM_038590030
RefSeq Acc Id: XP_038509787   ⟸   XM_038653859
- UniProtKB: A0A8C0M797 (UniProtKB/TrEMBL),   A0A8I3MAB4 (UniProtKB/TrEMBL),   A0A8C0PJB8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038319739   ⟸   XM_038463811
- UniProtKB: A0A8C0M797 (UniProtKB/TrEMBL),   A0A8I3MAB4 (UniProtKB/TrEMBL),   A0A8C0PJB8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038381665   ⟸   XM_038525737
- UniProtKB: A0A8C0M797 (UniProtKB/TrEMBL),   A0A8C0PJB8 (UniProtKB/TrEMBL),   A0A8I3MAB4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845000207   ⟸   ENSCAFT00845000298
Ensembl Acc Id: ENSCAFP00845000205   ⟸   ENSCAFT00845000294
Protein Domains
C2H2-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000000013 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030001902 UniProtKB/TrEMBL
  ENSCAFG00040000016 UniProtKB/TrEMBL
  ENSCAFG00845000191 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000000017.6 UniProtKB/TrEMBL
  ENSCAFT00000097951.1 UniProtKB/TrEMBL
  ENSCAFT00030003438.1 UniProtKB/TrEMBL
  ENSCAFT00030003449.1 UniProtKB/TrEMBL
  ENSCAFT00040000033.1 UniProtKB/TrEMBL
  ENSCAFT00845000294 ENTREZGENE
  ENSCAFT00845000294.1 UniProtKB/TrEMBL
  ENSCAFT00845000298.1 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Sal_C2H2-zinc-finger UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
NCBI Gene SALL3 ENTREZGENE
PANTHER SAL-LIKE PROTEIN UniProtKB/TrEMBL
  SAL-LIKE PROTEIN 3 UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A8C0M797 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0M7A7_CANLF UniProtKB/TrEMBL
  A0A8C0PJB8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MAB4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MUN6_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:49643 ENTREZGENE