LOC108348181 (odorant-binding protein-like) - Rat Genome Database

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Gene: LOC108348181 (odorant-binding protein-like) Rattus norvegicus
Analyze
Symbol: LOC108348181 (Ensembl: Obp1f)
Name: odorant-binding protein-like (Ensembl:odorant binding protein I f)
RGD ID: 11461170
Description: Predicted to enable small molecule binding activity. Predicted to be involved in sensory perception of smell.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC108348177; uncharacterized LOC108348177
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X45,899,583 - 45,907,752 (-)NCBIGRCr8
mRatBN7.2X42,021,106 - 42,028,548 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX42,021,200 - 42,028,106 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0X45,282,118 - 45,285,218 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Cytogenetic MapXq21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
Additional References at PubMed
PMID:3388043  


Genomics

Variants

.
Variants in LOC108348181
32 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat
10755455Coatc13Coat color QTL 130coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7440600049406000Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X449454949494549Rat
71116Niddm16Non-insulin dependent diabetes mellitus QTL 167.81blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X1529780260297802Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000073734   ⟹   ENSRNOP00000064887
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 EnsemblX42,021,200 - 42,028,106 (-)Ensembl
RefSeq Acc Id: XM_017602217   ⟹   XP_017457706
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X45,899,583 - 45,907,752 (-)NCBI
mRatBN7.2X42,021,106 - 42,028,548 (-)NCBI
Rnor_6.0X45,282,118 - 45,285,218 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_017457706 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA41736 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_017457706   ⟸   XM_017602217
- UniProtKB: P08937 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000064887   ⟸   ENSRNOT00000073734

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-2407 BioCyc
Ensembl Genes ENSRNOG00000062551 Ensembl
NCBI Gene LOC108348181 ENTREZGENE
PhenoGen LOC108348181 PhenoGen
RatGTEx ENSRNOG00000062551 RatGTEx
UniProt P08937 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 LOC108348181  odorant-binding protein-like  LOC108348177  uncharacterized LOC108348177  Data merged from RGD:11439293 737654 PROVISIONAL
2016-08-02 LOC108348181  odorant-binding protein-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2016-08-02 LOC108348177  uncharacterized LOC108348177      Symbol and Name status set to provisional 70820 PROVISIONAL