| 1310497 | Six6 | SIX homeobox 6 | ENCODES a protein that exhibits RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); ASSOCIATED WITH Isolated Microphthalmia with Cataract 2 (ortholog); myopia (ortholog); optic disc anomalies with retinal and/or macular dystrophy (ortholog); FOUND IN nucleus (inferred); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; bisphenol A | 6 | 97357883 | 97375415 | Rat | 59 | symbol , old_gene_name , PhenoGen | gene, protein-coding, PROVISIONAL [RefSeq] |
| 1321431 | SIX6 | SIX homeobox 6 | The protein encoded by this gene is a homeobox protein that is similar to the Drosophila 'sine oculis' gene product. This gene is found in a cluster of related genes on chromosome 14 and is thought to be involved in eye development. Defects in this gene are a cause of isolated microphthalmia with ca taract type 2 (MCOPCT2). [provided by RefSeq, Jul 2008] | 14 | 60509146 | 60512850 | Human | 129 | symbol , old_gene_name , COSMIC , Human Proteome Map | gene, protein-coding, REVIEWED [RefSeq] |
| 1321432 | Six6 | sine oculis-related homeobox 6 | This gene encodes a homeobox protein that is similar to the Drosophila 'sine oculis' gene product. This gene is found in a cluster of related genes on chromosome 12 and is thought to be involved in eye development. The encoded transcription factor regulates early progenitor cell proliferation during mammalian retinogenesis and pituitary development. Mice lacking this gene exhibit abnormal development of the suprachiasmatic nucleus and circadian rhythms. [provided by RefSeq, Sep 2015] | 12 | 72986656 | 72991673 | Mouse | 81 | symbol , old_gene_name , PhenoGen | gene, protein-coding, REVIEWED [RefSeq] |
| 9020185 | Six6 | SIX homeobox 6 | ENCODES a protein that exhibits RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); ASSOCIATED WITH Isolated Microphthalmia with Cataract 2 (ortholog); myopia (ortholog); optic disc anomalies with retinal and/or macular dystrophy (ortholog) | NW_004955466 | 9120227 | 9122109 | Chinchilla | 9 | symbol , old_gene_name | gene, protein-coding, MODEL [RefSeq] |
| 11883458 | SIX6 | SIX homeobox 6 | ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN eye development (inferred); regulation of transcription by RNA polym erase II (inferred); ASSOCIATED WITH Isolated Microphthalmia with Cataract 2 (ortholog); myopia (ortholog); optic disc anomalies with retinal and/or macular dystrophy (ortholog); FOUND IN nucleus (inferred); transcription regulator complex (inferred) | 14 | 41113282 | 41117018 | Bonobo | 20 | symbol , old_gene_name | gene, protein-coding, MODEL [RefSeq] |
| 12253607 | SIX6 | SIX homeobox 6 | ENCODES a protein that exhibits DNA binding (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); sequence-specific double-stranded DNA binding (inferred); ASSOCIATED WITH Isolated Microphthalmia with Cataract 2 (ortholog); myopia (ortholog); optic disc anomal ies with retinal and/or macular dystrophy (ortholog); FOUND IN nucleus (inferred) | 8 | 35565838 | 35568423 | Dog | 20 | symbol , old_gene_name | gene, protein-coding, MODEL [RefSeq] |
| 12735358 | Six6 | SIX homeobox 6 | ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN eye development (inferred); regulation of transcription by RNA polym erase II (inferred); ASSOCIATED WITH Isolated Microphthalmia with Cataract 2 (ortholog); myopia (ortholog); optic disc anomalies with retinal and/or macular dystrophy (ortholog); FOUND IN nucleus (inferred); transcription regulator complex (inferred) | NW_004936495 | 4716359 | 4719162 | Squirrel | 20 | symbol , old_gene_name | gene, protein-coding, MODEL [RefSeq] |
| 14024916 | SIX6 | SIX homeobox 6 | ENCODES a protein that exhibits DNA binding (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); sequence-specific double-stranded DNA binding (inferred); ASSOCIATED WITH Isolated Microphthalmia with Cataract 2 (ortholog); myopia (ortholog); optic disc anomal ies with retinal and/or macular dystrophy (ortholog); FOUND IN nucleus (inferred) | | | | Pig | 20 | symbol , old_gene_name | gene, protein-coding, MODEL [RefSeq] |
| 18631919 | SIX6 | SIX homeobox 6 | ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); INVOLVED IN eye development (inferred); regulation of transcription by RNA polym erase II (inferred); ASSOCIATED WITH Isolated Microphthalmia with Cataract 2 (ortholog); myopia (ortholog); optic disc anomalies with retinal and/or macular dystrophy (ortholog); FOUND IN nucleus (inferred); transcription regulator complex (inferred) | | | | Green Monkey | 20 | symbol , old_gene_name | gene, protein-coding, MODEL [RefSeq] |
| 18929007 | Six6 | SIX homeobox 6 | ENCODES a protein that exhibits sequence-specific double-stranded DNA binding (ortholog); INVOLVED IN eye development (inferred); regulation of transcription by RNA polymerase II (inferred); ASSOCIATED WITH Isolated Microphthalmia with Cataract 2 (ortholog); myopia (ortholog); optic disc anomalies w ith retinal and/or macular dystrophy (ortholog); FOUND IN nucleus (inferred); transcription regulator complex (inferred) | | | | Naked Mole-Rat | 19 | symbol , old_gene_name | gene, protein-coding, MODEL [RefSeq] |
| 155234430 | six6 | | | | | | Tropical Clawed Frog | | symbol | gene, null |
| 626118198 | Six6 | SIX homeobox 6 | ENCODES a protein that exhibits RNA polymerase II cis-regulatory region sequence-specific DNA binding (ortholog); sequence-specific double-stranded DNA binding (ortholog); ASSOCIATED WITH Isolated Microphthalmia with Cataract 2 (ortholog); myopia (ortholog); optic disc anomalies with retinal and/or macular dystrophy (ortholog) | | | | Black Rat | 9 | symbol , old_gene_name | gene, protein-coding, MODEL [RefSeq] |
| 155243669 | six6.L | | | | | | African Clawed Frog | | symbol | gene, null |
| 155234429 | six6.S | | | | | | African Clawed Frog | | symbol | gene, null |
| 1559456 | Six6os1 | Six6 opposite strand transcript 1 | INVOLVED IN homologous chromosome pairing at meiosis (ortholog); meiotic cell cycle (ortholog); meiotic DNA double-strand break processing involved in reciprocal meiotic recombination (ortholog); ASSOCIATED WITH azoospermia (ortholog); primary ovarian insufficiency (ortholog); primary ovarian insuff iciency 18 (ortholog); FOUND IN central element (ortholog); chromosome (ortholog); INTERACTS WITH bisphenol A; trichloroethene; 2-palmitoylglycerol (ortholog) | 6 | 97314829 | 97351069 | Rat | 46 | symbol , PhenoGen , name | gene, protein-coding, VALIDATED [RefSeq] |
| 1620733 | 4930447C04Rik | RIKEN cDNA 4930447C04 gene | Involved in meiosis I; oogenesis; and spermatogenesis. Located in central element. Is expressed in several structures, including genitourinary system; intestine; liver; lung; and retina. Human ortholog(s) of this gene implicated in primary ovarian insufficiency 18 and spermatogenic failure 52. Ortho logous to human C14orf39 (chromosome 14 open reading frame 39). [provided by Alliance of Genome Resources, Jul 2025] | 12 | 72926967 | 72964742 | Mouse | 74 | old_gene_name , old_gene_symbol | gene, protein-coding, PROVISIONAL [RefSeq] |
| 1350418 | C14orf39 | chromosome 14 open reading frame 39 | Involved in homologous chromosome pairing at meiosis. Predicted to be located in chromosome. Predicted to be active in central element. Implicated in primary ovarian insufficiency 18 and spermatogenic failure 52. [provided by Alliance of Genome Resources, Jul 2025] | 14 | 60435956 | 60515544 | Human | 77 | old_gene_name , old_gene_symbol | gene, protein-coding, VALIDATED [RefSeq] |
| 405855999 | six6os1 | | | | | | Tropical Clawed Frog | | symbol | gene, null |
| 405856816 | six6os1 | | | | | | Tropical Clawed Frog | | symbol | gene, null |
| 405857748 | six6os1 | | | | | | Tropical Clawed Frog | | symbol | gene, null |
| 405865553 | six6os1 | | | | | | Tropical Clawed Frog | | symbol | gene, null |
| 598152693 | six6os1 | | | | | | Tropical Clawed Frog | | symbol | gene, null |
| 405856000 | six6os1.S | | | | | | African Clawed Frog | | symbol | gene, null |
| 405859211 | six6os1.S | | | | | | African Clawed Frog | | symbol | gene, null |
| 405864205 | six6os1.S | | | | | | African Clawed Frog | | symbol | gene, null |
| 405865552 | six6os1.S | | | | | | African Clawed Frog | | symbol | gene, null |
| 626171025 | six6os1.S | | | | | | African Clawed Frog | | symbol | gene, null |
| 626182962 | six6os1p.L | | | | | | African Clawed Frog | | symbol | gene, null |
| 14210052 | C1H14orf39 | chromosome 1 C14orf39 homolog | INVOLVED IN homologous chromosome pairing at meiosis (inferred); meiotic cell cycle (inferred); meiotic DNA double-strand break processing involved in reciprocal meiotic recombination (inferred); ASSOCIATED WITH azoospermia (ortholog); primary ovarian insufficiency (ortholog); primary ovarian insuff iciency 18 (ortholog); FOUND IN central element (inferred); chromosome (inferred) | | | | Pig | 22 | old_gene_name | gene, protein-coding, MODEL [RefSeq] |
| 18507019 | C24H14orf39 | chromosome 24 C14orf39 homolog | INVOLVED IN homologous chromosome pairing at meiosis (inferred); meiotic cell cycle (inferred); meiotic DNA double-strand break processing involved in reciprocal meiotic recombination (inferred); ASSOCIATED WITH azoospermia (ortholog); primary ovarian insufficiency (ortholog); primary ovarian insuff iciency 18 (ortholog); FOUND IN central element (inferred); chromosome (inferred) | | | | Green Monkey | 22 | old_gene_name | gene, protein-coding, MODEL [RefSeq] |
| 626081958 | C7H14orf39 | chromosome 7 C14orf39 homolog | INVOLVED IN homologous chromosome pairing at meiosis (ortholog); meiotic cell cycle (ortholog); meiotic DNA double-strand break processing involved in reciprocal meiotic recombination (ortholog); ASSOCIATED WITH azoospermia (ortholog); primary ovarian insufficiency (ortholog); primary ovarian insuff iciency 18 (ortholog); FOUND IN central element (ortholog); chromosome (ortholog) | | | | Black Rat | 18 | old_gene_name | gene, protein-coding, MODEL [RefSeq] |
| 12117408 | C8H14orf39 | chromosome 8 C14orf39 homolog | INVOLVED IN homologous chromosome pairing at meiosis (inferred); meiotic cell cycle (inferred); meiotic DNA double-strand break processing involved in reciprocal meiotic recombination (inferred); ASSOCIATED WITH azoospermia (ortholog); primary ovarian insufficiency (ortholog); primary ovarian insuff iciency 18 (ortholog); FOUND IN central element (inferred); chromosome (inferred) | 8 | 35486476 | 35542214 | Dog | 22 | old_gene_name | gene, protein-coding, MODEL [RefSeq] |
| 18933181 | CUNH14orf39 | chromosome unknown C14orf39 homolog | INVOLVED IN homologous chromosome pairing at meiosis (inferred); meiotic cell cycle (inferred); meiotic DNA double-strand break processing involved in reciprocal meiotic recombination (inferred); ASSOCIATED WITH azoospermia (ortholog); primary ovarian insufficiency (ortholog); primary ovarian insuff iciency 18 (ortholog); FOUND IN central element (inferred); chromosome (inferred) | | | | Naked Mole-Rat | 22 | old_gene_name | gene, protein-coding, MODEL [RefSeq] |
| 11925840 | C15H14orf39 | chromosome 15 C14orf39 homolog | INVOLVED IN homologous chromosome pairing at meiosis (inferred); meiotic cell cycle (inferred); meiotic DNA double-strand break processing involved in reciprocal meiotic recombination (inferred); ASSOCIATED WITH azoospermia (ortholog); primary ovarian insufficiency (ortholog); primary ovarian insuff iciency 18 (ortholog); FOUND IN central element (inferred); chromosome (inferred) | 14 | 41040315 | 41090267 | Bonobo | 22 | old_gene_name | gene, protein-coding, MODEL [RefSeq] |