RGD:86727174 Rat Genome Database

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Variant: RGD:86727174 -  Canis lupus familiaris

RGD ID: 86727174
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: SNX8  
Reference Nucleotide: T
Variant Nucleotide: C
Position
Assembly Chr Position
CanFam3.1 6 14,863,340
JBrowse: View Region in Genome Browser (JBrowse)
Model
Breeds: Chinese indigenous dogs, Doberman Pinscher, German Shepherd, Kunming Dog, Tibetan Mastiff




Gene Symbol:SNX8
Accession:XM_022419808
Location:EXON
Amino Acid Prediction: L to P (nonsynonymous)
Amino Acid Position: 369
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
probably damaging alignment     -1.039 -3.922 +2.883 119   XP_022275516   +
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MTGGVMDRLSAEAGAAPVVAAAEAEADEEADPPAADREAEAQRSHHWARTGERDSHAGLPTPQISERRDPYPNRMQMPQG
NPLLLSYTLQELLARDTVQVELIPEKKGLFLKHVEYEVSSQGGRSAQGVKGSACWCLSLGRSLGHSFYPGPCSPEVPQQR
DMPGFMVFFLCLSQGARFLGSDWLLSPSSVLYKQYSIFNFVARAHVSCELIQESQRFQSSVYRRYNDFVVFHEMLLHRFP
YRMVPALPPKRVLGADREFIESRRRALRRFINLVARHPPFSEDVALRLFLSFSGPDVQNKLKESTQCVGDEFMNCKLAPR
AKDFLPADIQTQFAVSRELIRNIYNSFYKLRDRAERIASRAIDNAADLPVFGKELSALGSDTTPLPSWAALNSSTWGSLK
QALKGLSVEFALLADKAAQQGKQEENDVVEKLNLFLDLLQSYKDLCERHEKGVLHKHQRALHKYSLMKRQMMSAAVQSRE
PDSVEQLESRIVEQENAIQTMELRSYFSLYCLHQEMQLVHVYLPLTSHILGAFVNSQIQGHKEMSKVWNDLKPKLNCLFA
GPNSSLTLPRSPQDGVSPH*