RGD:85837983 Rat Genome Database

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Variant: RGD:85837983 -  Canis lupus familiaris

RGD ID: 85837983
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: SKI  
Reference Nucleotide: T
Variant Nucleotide: C
Position
Assembly Chr Position
CanFam3.1 5 57,212,346
JBrowse: View Region in Genome Browser (JBrowse)
Model
Breeds: Leonberger




Gene Symbol:SKI
Accession:XM_014113853
Location:EXON
Amino Acid Prediction: V to A (nonsynonymous)
Amino Acid Position: 786
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
possibly damaging alignment     -1.610 -2.718 +1.108 136   XP_013969328   +
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MWGPRPAGSARCAVEAAQAAVLPAPPRVCGCGGGRVWVSGPGSGDGGDGGGGSTGAFPAAQEAASAGRGGPGRRHCPRRA
PFRRAGPSSAERGRAAPSGTERGRAGPSGAERGRAGPSPGRAGPSGAESRPSGAEFLAGRPEGGRVETSRGLQKTLEQFH
LSSMSSLGGPAAFSARWAQEAYKKESAKEASAAAVPAPVPAAAEPPPVLHLPAIQPPPPVLPGPFFMPSDRSTERCETVL
EGETISCFVVGGEKRLCLPQILNSVLRDFSLQQINSVCDELHIYCSRCTADQLEILKVMGILPFSAPSCGLITKTDAERL
CNALLYGGAYPPPCKKELAASLALGLELSERSVRVYHECFGKCKGLLVPELYSSPSAACIQCLDCRLMYPPHKFVVHSHK
ALENRTCHWGFDSANWRAYILLSQDYTGKEEQARLGRCLDDVKEKFDYGNKYKRRVPRVSSEPPASIRKTDDAPSQLPPS
SEKDKQSGWLRTLAGPSSKSLGCVHPRQRLSAFRPWSPAVSTSDKELSPHLPALIRDSFYSYKSFETGVAPNVALAPPAQ
QKVVSSPPCATVVSRATEPLATCLQPRKRKLTVDTPGAPETPAPAAAPEDDKDSEAEVEVESREEFTSSLSSLSSPSLTS
SSSAKDLSSPGVHAPPAVPPAPEVAAPADTTSGGLEAELEHLRQALEGGLDTKEAKEKFLHEVVKMRVKQEEKLSAALQA
KRSLHQELEFLRVAKKEKLREATEAKRNLRKEIERLRAENEKKMREANESRLRLKRELEQARQVRACDKGCEAGRLRAKY
SAQIEDLQVKLQHAEADREQLRADLLREREAREHLEKVVKELQEQLWPRPRPEAAGSESTAELEP*
Leonberger (LB111)