rs851085336 Rat Genome Database

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Variant: rs851085336 -  Canis lupus familiaris

RGD ID: 79910899
RS ID: rs851085336
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: NOD2  
Reference Nucleotide: C
Variant Nucleotide: T
Position
Assembly Chr Position
CanFam3.1 2 64,655,533
JBrowse: View Region in Genome Browser (JBrowse)
Model
Breeds: American Staffordshire Terrier, Australian Cattle dog, Bearded Collie, Border Collie, Border Terrier, Bullmastiff, Bullterrier, Cairn Terrier, Chihuahua, Chinese Crested, Chinese indigenous dogs, Doberman Pinscher, French Bulldog, German Hunting Terrier, German Shepherd/Mixed breed, Golden Retriever, Great Dane, Greyhound, Heideterrier, Irish Terrier, Jagdterrier, Kunming Dog, Labrador Retriever, Lagotto Romagnolo, Malinois, Miniature Bullterrier, Mixed Breed, Norwich Terrier, Shetland Sheepdog, Tibetan Mastiff, West Highland White Terrier, Wolf, Yorkshire Terrier




Gene Symbol:NOD2
Accession:NM_001287039
Location:EXON
Amino Acid Prediction: V to M (nonsynonymous)
Amino Acid Position: 564
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
possibly damaging alignment     -2.009 -4.404 +2.395 249   NP_001273968   -
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MCTQEAFQTQRSQLVGLLVSGSLEGFESILDWLLSWEVLSWEDYEGLSLLGQPLSYLARRLLDTVWNKGTWGCEQLVAAV
REAQTDCQALELSSCWDPHSPHPARDLQSHRPAIVRRLYSHVEDVLNLAWEQGFISQYERDEIRLPIFTSSQRARRLLDL
ATVKANGLAAFLLRHVQELPVPLAMPSEDAACKKYMSKLRTTISSQSRFLSTYDGAENLCLEEIYTENVLEIRTEMGLAR
SPQKSPATLSLEELFSTCGHLNEDADTVLVVGEAGSGKSTLLQRMHLLWASGRDFQEFLFVFPFSCRQLQCVAKPLSVQM
LLFEHCCWPDFGQQEVFQFLLDHPNRVLLTFDGFDEFRFRFSDHERHCSPTDPTSVQNLLFNLLQGNLLKNARKVLTSRP
DAVSALLRKYLRLEINLKGFSEEGIELYLRKCHREPGVADRLIRLLKTTSALHGLCHLPVVSWMVSKCHQELLLHGGGSP
KTSTDMYLLILQHFLLHASPPDSVPHSLGSHLLRGRLPTLLHLGWLALWGLGMCCYVFSAKQLQAAHIDDEDISLGFLVH
AKTMGPGSTTPLEFLHITFQCFFAALYLVLSTDVSPSLLRQLFICHGPRSSLLARLLPTTCVPRSERKEGSLAALLQEAE
PHNLQITAAFLAGLLSREHRGLLAECQANEEALLRLQGRAQGCLSRSLHQHFRSIPPAVPGEAKSMHAMPGFLWLIRSLY
EMQEERLAREAVRGLTVGHLKLTFCGVGPPECAALAFVLRHLRRPVALQLDHNSVGDIGVEQLLPCLSVCKALYLRDNNI
SDRGICKLIEHALHCEQLQKLALFNNKLTDGCAHSMARLLACKQNFLALRLGNNRITAAGAQALAEGLRANTSLQFLGFW
GNKVGDEGAQALAEALGDHQSLRWLSLVGNDIGSVGARALALMLEKNVALEELCLEENHLQDEGVCSLAKGLERNSSLKV
LKLSNNCITYLGAEGLLQALEKNDTILEVWLRGNTFSLEEMERLSQKDTRLLL*
1 to 13 of 13 rows
Bearded Collie (BD093) Australian Cattle dog (AC023) Australian Cattle dog (AC046) American Staffordshire Terrier (AS006) Bearded Collie (BD036) Bearded Collie (BD085)
Bearded Collie (BD089) Bearded Collie (BD091) Doberman Pinscher (DO263) Bearded Collie (BD098) Miniature Bullterrier (BT007) Bullterrier (BT012)
Bullmastiff (BU002) Cairn Terrier (CE073) Chihuahua (CH019) Great Dane (DD116) Doberman Pinscher (DO159) Doberman Pinscher (DO242)
Jagdterrier (JT011) German Shepherd/Mixed breed (DS032) French Bulldog (FB046) French Bulldog (FB065) Golden Retriever (GR1078) Greyhound (GY432)
Heideterrier (HT001) Irish Terrier (IT0390) Irish Terrier (IT221) German Hunting Terrier (JT007) Yorkshire Terrier (YT003) Kunming Dog (KM1)
Kunming Dog (KM10) Kunming Dog (KM2) Kunming Dog (KM4) Kunming Dog (KM5) Kunming Dog (KM6) Kunming Dog (KM8)
Kunming Dog (KM9) Labrador Retriever (LA1869) Labrador Retriever (LA2382) Chinese indigenous dogs (LJ1) Chinese indigenous dogs (LJ3) Chinese indigenous dogs (LJ4)
Chinese indigenous dogs (LJ6) Chinese indigenous dogs (LJ8) Border Collie (LN47) Lagotto Romagnolo (LR1030) Lagotto Romagnolo (LR390) Lagotto Romagnolo (LR433)
Lagotto Romagnolo (LR538) Lagotto Romagnolo (LR654) Malinois (MA0163) Malinois (MA142) Malinois (MA152) Malinois (MA324)
Mixed Breed (MI016) Norwich Terrier (NW062) Norwich Terrier (NW152) Norwich Terrier (NW255) Spanish Wolf (SRS661495) Chinese Crested (SRS713815)
Shetland Sheepdog (SRS932138) Border Terrier (SRS932144) Shetland Sheepdog (SS004) Tibetan Mastiff (TM8) West Highland White Terrier (WW174) West Highland White Terrier (WW361)
West Highland White Terrier (WW362) West Highland White Terrier (WW363) West Highland White Terrier (WW364) West Highland White Terrier (WW558) West Highland White Terrier (WW64) Chinese indigenous dogs (YJ1)
Chinese indigenous dogs (YJ4)
1 to 13 of 13 rows