RGD:70879221 Rat Genome Database

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Variant: RGD:70879221 -  Rattus norvegicus

RGD ID: 70879221
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: Rps6  
Reference Nucleotide: A
Variant Nucleotide: G
Position
Assembly Chr Position
RGSC_v3.4 5 106,167,866
JBrowse: View Region in Genome Browser (JBrowse)
Model




Gene Symbol:Rps6
Accession:NM_017160
Location:EXON
Amino Acid Prediction: F to S (nonsynonymous)
Amino Acid Position: 27
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
possibly damaging alignment   NO -1.152 -2.638 +1.486 153 4 NP_058856 3u5c -
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MKLNISFPATGCQKLIEVDDERKLRTSYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGRVRLLLSKG
HSCYRPRRTGERKRKSVRGCIVDANLSVLNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRK
PLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKEKRQEQIAKRRRLSSLRAS
TSKSESSQK*
ACI/EurMcwi (MCW) FHH/EurMcwi (MCW) BUF/N (KNAW) FHL/EurMcwi (MCW) SR/JrHsd (MCW) BN/SsN (KNAW)
BN/NHsdMcwi (KNAW)