RGD:67123881 Rat Genome Database

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Variant: RGD:67123881 -  Rattus norvegicus

RGD ID: 67123881
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: Ephx1  
Reference Nucleotide: T
Variant Nucleotide: A
Position
Assembly Chr Position
RGSC_v3.4 13 96,734,253
JBrowse: View Region in Genome Browser (JBrowse)
Model




Gene Symbol:Ephx1
Accession:NM_001034090
Location:EXON
Amino Acid Prediction: N to I (nonsynonymous)
Amino Acid Position: 99
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
possibly damaging alignment   NO -1.623 -3.932 +2.309 145   NP_001029262   -
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MWLELVLASLLGFVIYWFVSRDKEETLPLGDGWWGPGSKPSAKEDESIRPFKVETSDEEIKDLHQRIDRFRASPPLEGSR
FHYGFNSNYMKKVVSYWRIEFDWRKQVEILNQYPHFKTKIEGLDIHFIHVKPPQLPSGRTPKPLLMVHGWPGSFYEFYKI
IPLLTDPKSHGLSDEHVFEVICPSIPGYGYSEASSKKGLNSVATARIFYKLMTRLGFQKFYIQGGDWGSLICTNMAQMVP
NHVKGLHLNMAFISRSFYTMTPLLGQRFGRFLGYTEKDIELLYPYKEKVFYSIMRESGYLHIQATKPDTVGCALNDSPVG
LAAYILEKFSTWTKSEYRELEDGGLERKFSLDDLLVNIMIYWTTGTIVSSQRYYKENLGQGIMVHKHEGMKVFVPTGFSA
FPSELLHAPEKWVKVKYPKLISYSYMERGGHFAAFEEPKLLAQDIRKFVSLAELQ*

Gene Symbol:Ephx1
Accession:NM_012844
Location:EXON
Amino Acid Prediction: N to I (nonsynonymous)
Amino Acid Position: 99
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
possibly damaging alignment   NO -1.623 -3.932 +2.309 145   NP_036976   -
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MWLELVLASLLGFVIYWFVSRDKEETLPLGDGWWGPGSKPSAKEDESIRPFKVETSDEEIKDLHQRIDRFRASPPLEGSR
FHYGFNSNYMKKVVSYWRIEFDWRKQVEILNQYPHFKTKIEGLDIHFIHVKPPQLPSGRTPKPLLMVHGWPGSFYEFYKI
IPLLTDPKSHGLSDEHVFEVICPSIPGYGYSEASSKKGLNSVATARIFYKLMTRLGFQKFYIQGGDWGSLICTNMAQMVP
NHVKGLHLNMAFISRSFYTMTPLLGQRFGRFLGYTEKDIELLYPYKEKVFYSIMRESGYLHIQATKPDTVGCALNDSPVG
LAAYILEKFSTWTKSEYRELEDGGLERKFSLDDLLVNIMIYWTTGTIVSSQRYYKENLGQGIMVHKHEGMKVFVPTGFSA
FPSELLHAPEKWVKVKYPKLISYSYMERGGHFAAFEEPKLLAQDIRKFVSLAELQ*
F344/NRrrc (KNAW) M520/N (KNAW) F344/NHsd (ICAHN) F344/NCrl (ICL) SBH/Ygl (ICL) HCR/1Mco (UMich)
LCR/1Mco (UMich) HCR/2Mco (UMich) LCR/2Mco (UMich)