RGD:63506071 Rat Genome Database

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Variant: RGD:63506071 -  Rattus norvegicus

RGD ID: 63506071
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: Setsip  
Reference Nucleotide: A
Variant Nucleotide: T
Position
Assembly Chr Position
RGSC_v3.4 19 55,797,409
JBrowse: View Region in Genome Browser (JBrowse)
Model




Gene Symbol:Setsip
Accession:NM_001012504
Location:EXON
Amino Acid Prediction: H to L (nonsynonymous)
Amino Acid Position: 117
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
possibly damaging alignment   NO -1.394 -2.556 +1.162 448   NP_001012522   +
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MAPKRQSAILPQPKKPRPVAAPKLEDKSASPGLPKGEKEQQEAIEHIDEVQNEIDRLNEQASEEILKVEQKYNKLRQPFF
QKRSELITKIPNFWVTTFVNHPQVSALLGEEDEEALLYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHLNES
GDPSSKSTEIKWKSGKDLTKCSSQTQNKASRKRQHEEPESFFTWFTDHSDAGADELGEVIKDDIWPNPLQYYLVPDMDDE
EGEAEDDDDDDEEEEGLEDIDEEGDEDEGEEDNDEDEGEEGEEDEGEDD*
ACI/EurMcwi (MCW) COP/CrCrl (MCW & UW) GH/OmrMcwi (MCW) LE/Stm (ICL) LEW/Crl (ICL) LL/MavRrrc (ICL)
SBH/Ygl (ICL) SBN/Ygl (ICL) SHR/OlaIpcv (ICL) WKY/NCrl (ICL) ACI/EurMcwi (ICL)