RGD:62640861 Rat Genome Database

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Variant: RGD:62640861 -  Rattus norvegicus

RGD ID: 62640861
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: Mynn  
Reference Nucleotide: T
Variant Nucleotide: A
Position
Assembly Chr Position
Rnor_5.0 2 136,102,520
JBrowse: View Region in Genome Browser (JBrowse)
Model




Gene Symbol:Mynn
Accession:NM_001012178
Location:EXON
Amino Acid Prediction: S to C (nonsynonymous)
Amino Acid Position: 87
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
possibly damaging alignment   NO -1.922 -4.929 +3.007 364   NP_001012178   -
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MEDFAFIASPSSTEISSITGNIELNQQTCLLTLRDYNNREKSEVSTDSVQANPKQRVLTKKSSQSKKKKKAFNSQNPGRA
KALQHHCGVSESASVELFLDANKLSPPAVEQVIQGNDTSELELTSVVENTFPAQDIVQTVTVKRKRRKSQSHCALKEHSM
SNIASVKSPYELENAGEELDPRYSKAKPMCNTCGKVFSEASSLRRHMRIHKGVKPYVCHLCGKAFTQCNQLKTHVRTHTG
ERPYKCELCDKGFAQKCQLVFHSRMHHGEEKPYKCDVCNLQFATSSNLKIHARKHSGEKPYVCDRCGQRFAQASTLTYHV
RRHTGEKPYVCDTCGKAFAVSSSLITHSRKHTGERPFICELCGNSYTDIKNLKKHKTKVHSGTDKNADCSVDDHAVSEQD
SIQRSPLSETLDVKPSDMTLPLALPLGTEDHHMLLPVTDSQSPTSDTLLRSTVNGYSEPQLIFLQQLY*

Gene Symbol:Mynn
Accession:XM_006232233
Location:EXON
Amino Acid Prediction: S to C (nonsynonymous)
Amino Acid Position: 201
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
possibly damaging alignment     -1.886 -4.957 +3.071 355   XP_006232295   -
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MQYSHHCEHLLERLNKQREAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRSTSENNVFLDQSQVKADGFQKLLEFI
YTGTLNLDSWNVKEIHQAADYLKVEEVVTKCKIKMEDFAFIASPSSTEISSITGNIELNQQTCLLTLRDYNNREKSEVST
DSVQANPKQRVLTKKSSQSKKKKKAFNSQNPGRAKALQHHCGVSESASVELFLDANKLSPPAVEQVIQGNDTSELELTSV
VENTFPAQDIVQTVTVKRKRRKSQSHCALKEHSMSNIASVKSPYELENAGEELDPRYSKAKPMCNTCGKVFSEASSLRRH
MRIHKGVKPYVCHLCGKAFTQCNQLKTHVRTHTGERPYKCELCDKGFAQKCQLVFHSRMHHGEEKPYKCDVCNLQFATSS
NLKIHARKHSGEKPYVCDRCGQRFAQASTLTYHVRRHTGEKPYVCDTCGKAFAVSSSLITHSRKHTGERPFICELCGNSY
TDIKNLKKHKTKVHSGTDKNADCSVDDHAVSEQDSIQRSPLSETLDVKPSDMTLPLALPLGTEDHHMLLPVTDSQSPTSD
TLLRSTVNGYSEPQLIFLQQLY*
F344/Jcl (KyushuU)