RGD:62064384 Rat Genome Database

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Variant: RGD:62064384 -  Rattus norvegicus

RGD ID: 62064384
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: Ercc1  
Reference Nucleotide: G
Variant Nucleotide: A
Position
Assembly Chr Position
Rnor_5.0 1 81,533,507
JBrowse: View Region in Genome Browser (JBrowse)
Model




Gene Symbol:Ercc1
Accession:NM_001106228
Location:EXON
Amino Acid Prediction: A to T (nonsynonymous)
Amino Acid Position: 272
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
probably damaging alignment   NO -1.307 -2.878 +1.571 19   NP_001099698   +
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MDPGKDEENRPQPSGPPTRKKFVIPLEEDEAPSSGAKPLFKSSRNPTPTAASTHSAPLTYAEYAIAQPPGGAGATVPTGS
EPATGDSPSQTLKAGTKSSSIIVSPRQRGNPVLKFVRSVPWEFGEVTPDYVLGQSTCALFLSLRYHNLHPDYIHERLQSL
GKNFALRVLLVQVDVKDPQQALKELAKICILADCTLVLAWSAEEAGRYLETYKAYEQKPADLLMEKLEQNFLSRATECLT
TVKSVNKTDSQTLLTTFGSLEQLITASREDLTLCPGLGPQKARRLFEVLHEPFLKVPR*

Gene Symbol:Ercc1
Accession:XM_006228395
Location:EXON
Amino Acid Prediction: A to T (nonsynonymous)
Amino Acid Position: 272
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
probably damaging alignment   NO -1.307 -2.878 +1.571 19   XP_006228457   +
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MDPGKDEENRPQPSGPPTRKKFVIPLEEDEAPSSGAKPLFKSSRNPTPTAASTHSAPLTYAEYAIAQPPGGAGATVPTGS
EPATGDSPSQTLKAGTKSSSIIVSPRQRGNPVLKFVRSVPWEFGEVTPDYVLGQSTCALFLSLRYHNLHPDYIHERLQSL
GKNFALRVLLVQVDVKDPQQALKELAKICILADCTLVLAWSAEEAGRYLETYKAYEQKPADLLMEKLEQNFLSRATECLT
TVKSVNKTDSQTLLTTFGSLEQLITASREDLTLCPGLGPQKARRLFEVLHEPFLKVPR*

Gene Symbol:Ercc1
Accession:XM_006228396
Location:EXON
Amino Acid Prediction: A to T (nonsynonymous)
Amino Acid Position: 272
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
probably damaging alignment   NO -1.307 -2.878 +1.571 19   XP_006228458   +
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MDPGKDEENRPQPSGPPTRKKFVIPLEEDEAPSSGAKPLFKSSRNPTPTAASTHSAPLTYAEYAIAQPPGGAGATVPTGS
EPATGDSPSQTLKAGTKSSSIIVSPRQRGNPVLKFVRSVPWEFGEVTPDYVLGQSTCALFLSLRYHNLHPDYIHERLQSL
GKNFALRVLLVQVDVKDPQQALKELAKICILADCTLVLAWSAEEAGRYLETYKAYEQKPADLLMEKLEQNFLSRATECLT
TVKSVNKTDSQTLLTTFGSLEQLITASREDLTLCPGLGPQKARRLFEVLHEPFLKVPR*
SS/JrHsdMcwi (MCW) SS/Jr (KNAW) SS/JrHsdMcwi (KNAW)