RGD:47763290 Rat Genome Database

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Variant: RGD:47763290 -  Rattus norvegicus

RGD ID: 47763290
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: Vegfc  
Reference Nucleotide: C
Variant Nucleotide: G
Position
Assembly Chr Position
Rnor_5.0 16 40,256,726
JBrowse: View Region in Genome Browser (JBrowse)
Model




Gene Symbol:Vegfc
Accession:NM_053653
Location:EXON
Amino Acid Prediction: A to P (nonsynonymous)
Amino Acid Position: 142
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
probably damaging alignment   NO -1.308 -3.599 +2.291 133   NP_446105   -
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MHLLCFLSLACSLLAAALIPGPREAPATVAAFESGLGFSEAEPDGGEVKGFEGKDLEEQLRSVSSVDELMSVLYPDYWKM
YKCQLRKGGWQQPSLNMRTGDTVKLAAAHYNTEILKSIDNEWRKTQCMPREVCIDVGKEFGPATNTFFKPPCVSVYRCGG
CCNSEGLQCMNTSTGYLSKTLFEITVPLSQGPKPVTISFANHTSCRCMSKLDVYRQVHSIIRRSLPATLPQCQAANKTCP
ANYVWNNYMCQCLAQQDFIFYSNVEDDSSNGFHDVCGPNKELDEDTCQCVCKGGLRPSSCGPHKELDRDSCQCVCKNKLF
LNSCGANREFDENTCQCVCKRTCPRNQPLNPGKCACECTENTQKCFLKGKKFHHQTCSCYRRPCTNRLKHCDPGLSFSEE
VCRCVPSYWKRPHLN*
FHH/EurMcwi (MCW) SR/JrHsd (MCW)