rs7182018 Rat Genome Database

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Variant: rs7182018 -  Homo sapiens

RGD ID: 155833740
RS ID: rs7182018
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: LOC105370777  
Reference Nucleotide: A
Variant Nucleotide: G
Position
Assembly Chr Position
GRCh38 15 39,340,068
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
rs7182018Humanbrain morphological measurement  IAGP 405850206Based on the EFO term IDGWAS_CATALOGPMID:33875891

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
rs7182018Humanbrain volume measurement  IAGP 405850206 GWAS_CATALOGPMID:33875891
rs7182018Humanneuroimaging measurement  IAGP 405850206 GWAS_CATALOGPMID:38811844
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS557785_H GCST90384991 T1 FreeSurfer a2009s rh G postcentral thickness 7,058 Chinese Han ancestry individuals G NR 1E-11 11 rs7182018 0.243661 neuroimaging measurement (EFO:0004346)
PMID:38811844
GWAS559457_H GCST90385578 T1 FreeSurfer BA rh BA3b exvivo volume 7,058 Chinese Han ancestry individuals G NR 1E-18 18 rs7182018 0.28722 neuroimaging measurement (EFO:0004346)
PMID:38811844
GWAS573294_H GCST90385744 T1 FreeSurfer DK rh postcentral thickness 7,058 Chinese Han ancestry individuals G NR 7E-11 10.155 rs7182018 0.23663 neuroimaging measurement (EFO:0004346)
PMID:38811844
GWAS584048_H GCST90384337 T1 FreeSurfer DKT rh postcentral thickness 7,058 Chinese Han ancestry individuals G NR 1E-9 9 rs7182018 0.220423 neuroimaging measurement (EFO:0004346)
PMID:38811844
GWAS1020153_H GCST007357 Voxel-wise structural brain imaging measurements 1,721 European ancestry adolescent individuals ? NR 4E-60 59.398 rs7182018 N/A neuroimaging measurement (EFO:0004346)
PMID:30649180
GWAS1020154_H GCST007357 Voxel-wise structural brain imaging measurements 1,721 European ancestry adolescent individuals ? NR 2E-70 69.699 rs7182018 N/A neuroimaging measurement (EFO:0004346)
PMID:30649180
None Available GCST90399892 Regional cortical thickness (parsopercularis) 34,538 European ancestry individuals A NR 3E-8 7.523 rs7182018 N/A cortical thickness (EFO:0004840)
PMID:38890310
None Available GCST90002820 aparc-Desikan rh volume parstriangularis 21,282 British ancestry individuals G 0.089 1E-18 18 rs7182018 0.15 brain volume measurement (EFO:0006930)
PMID:33875891

Variant Details
Variant Transcripts
Gene Symbol:LOC105370777
Accession:XR_932130
Location:INTRON;NON-CODING

Gene Symbol:LOC105370777
Accession:XR_001751487
Location:INTRON;NON-CODING

Gene Symbol:LOC105370777
Accession:XR_007064588
Location:INTRON;NON-CODING

Gene Symbol:LOC105370777
Accession:XR_007064587
Location:INTRON;NON-CODING

Gene Symbol:LOC105370777
Accession:XR_007064586
Location:INTRON;NON-CODING

Variant Samples

Additional Information

Database Acc Id Source(s)
GWAS Catalog GCST90002820 GWAS Catalog