RGD:134440964 Rat Genome Database

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Variant: RGD:134440964 -  Rattus norvegicus

RGD ID: 134440964
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: Tbx1  
Reference Nucleotide: G
Variant Nucleotide: C
Position
Assembly Chr Position
Rnor_6.0 11 86,560,534
JBrowse: View Region in Genome Browser (JBrowse)
Model




Gene Symbol:Tbx1
Accession:NM_001108322
Location:EXON
Amino Acid Prediction: G to R (nonsynonymous)
Amino Acid Position: 431
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
probably damaging alignment   NO -1.145 -3.708 +2.563 73   NP_001101792   +
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MHFSTVTRDMEAFAASSLSGLGAPSPGADPFGPREPPPPRYDPCTAAPGAPGPPPPPRAYPFAPAPGAASSSAAESEGPG
ASRAAAAKAPVKKNPKVASVSVQLEMKALWDEFNQLGTEMIVTKAGRRMFPTFQVKLFGMDPMADYMLLMDFVPVDDKRY
RYAFHSSSWLVAGKADPATPGRVHYHPDSPAKGAQWMKQIVSFDKLKLTNNLLDDNGHIILNSMHRYQPRFHVVYVDPRK
DSEKYAEENFKTFVFEETRFTAVTAYQNHRITQLKIASNPFAKGFRDCDPEDWPRNHRPGALPLVSAFARSRNPVASPTQ
PNGADKDVAEARREFDRDSGPAALGDATHPPQLLARVLSPALPGPGGLVPLPGGSGGRHSPPHADLRLEAPGASEPLHHH
PYKYPAAAYDHYLGAKSRPAPYPLPGLRGHRYHPHAHPHAHPHHHHHPAVNPAAAAAAAAAANVYSSAAAPPGAYDYCPR
*
M520/NRrrcMcwi (2019)