RGD:126474911 Rat Genome Database

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Variant: RGD:126474911 -  Rattus norvegicus

RGD ID: 126474911
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: Tp53  
Reference Nucleotide: G
Variant Nucleotide: A
Position
Assembly Chr Position
Rnor_6.0 10 56,197,995
JBrowse: View Region in Genome Browser (JBrowse)
Model




Gene Symbol:Tp53
Accession:NM_030989
Location:EXON
Amino Acid Prediction: D to N (nonsynonymous)
Amino Acid Position: 391
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
probably damaging alignment   NO -1.139 -2.958 +1.819 32   NP_112251   +
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MEDSQSDMSIELPLSQETFSCLWKLLPPDDILPTTATGSPNSMEDLFLPQDVAELLEGPEEALQVSAPAAQEPGTEAPAP
VAPASATPWPLSSSVPSQKTYQGNYGFHLGFLQSGTAKSVMCTYSISLNKLFCQLAKTCPVQLWVTSTPPPGTRVRAMAI
YKKSQHMTEVVRRCPHHERCSDGDGLAPPQHLIRVEGNPYAEYLDDRQTFRHSVVVPYEPPEVGSDYTTIHYKYMCNSSC
MGGMNRRPILTIITLEDSSGNLLGRDSFEVRVCACPGRDRRTEEENFRKKEEHCPELPPGSAKRALPTSTSSSPQQKKKP
LDGEYFTLKIRGRERFEMFRELNEALELKDARAAEESGDSRAHSSYPKTKKGQSTSRHKKPMIKKVGPDSN*

Gene Symbol:Tp53
Accession:XM_008767773
Location:INTRON

Gene Symbol:Tp53
Accession:XM_017597018
Location:INTRON

WKY/N (MCW) BXH3/CubMcwi (2020) SHR/OlalpcvMcwi (2019) WKY/NCrl (2019) WKY/N (2020) HXB4/IpcvMcwi (2020)
HXB10/IpcvMcwi (2019) HXB2/IpcvMcwi (2019) HXB31/IpcvMcwi (2019)