RGD:126465623 Rat Genome Database

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Variant: RGD:126465623 -  Rattus norvegicus

RGD ID: 126465623
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: Socs3  
Reference Nucleotide: A
Variant Nucleotide: T
Position
Assembly Chr Position
Rnor_6.0 10 106,975,923
JBrowse: View Region in Genome Browser (JBrowse)
Model




Gene Symbol:Socs3
Accession:XM_008768398
Location:EXON
Amino Acid Prediction: V to E (nonsynonymous)
Amino Acid Position: 34
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
probably damaging alignment   NO -1.072 -3.799 +2.727 241 1 XP_008766620 2bbu -
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MVTHSKFPAAGMSRPLDTSLRLKTFSSKSEYQLEVNAVRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFF
TLSVKTQSGTKNLRIQCEGGSFSLQSDPRSTQPVPRFDCVLKLVHHYMPPPGAPSFSLPPTEPSSEVQEQPPAQALPGGT
PKRAYYIYSGGEKIPLVLSRPLSSNVATLQHLCRKTVNGHLDSYEKVTQLPGPIREFLDQYDAPL*

Gene Symbol:Socs3
Accession:NM_053565
Location:EXON
Amino Acid Prediction: V to E (nonsynonymous)
Amino Acid Position: 34
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MVTHSKFPAAGMSRPLDTSLRLKTFSSKSEYQLEVNAVRKLQESGFYWSAVTGGEANLLLSAEPAGTFLIRDSSDQRHFF
TLSVKTQSGTKNLRIQCEGGSFSLQSDPRSTQPVPRFDCVLKLVHHYMPPPGAPSFSLPPTEPSSEVQEQPPAQALPGGT
PKRAYYIYSGGEKIPLVLSRPLSSNVATLQHLCRKTVNGHLDSYEKVTQLPGPIREFLDQYDAPL*
MR/N (MCW)