RGD:126164942 Rat Genome Database

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Variant: RGD:126164942 -  Rattus norvegicus

RGD ID: 126164942
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: Hsph1  
Reference Nucleotide: T
Variant Nucleotide: C
Position
Assembly Chr Position
Rnor_6.0 12 6,331,011
JBrowse: View Region in Genome Browser (JBrowse)
Model




Gene Symbol:Hsph1
Accession:NM_001011901
Location:EXON
Amino Acid Prediction: V to G (nonsynonymous)
Amino Acid Position: 484
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
probably damaging alignment   NO -1.376 -3.464 +2.088 267   NP_001011901   -
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MSVVGLDVGSQSCYIAVARAGGIETIANEFSDRCTPSVISFGPKNRTIGVAAKNQQITHANNTVSSFKRFHGRAFNDPFI
QKEKENLSYDLVPMKNGGVGIKVMYMDEDHLFSVEQITAMLLTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAA
QIVGLNCLRLMNDMTAVALNYGIYKQDLPNADEKPRVVVFVDMGHSSFQVSACAFNKGKLKVLGTAFDPFLGGKNFDEKL
VEHFCAEFKTKYKLDAKSKIRALLRLHQECEKLKKLMSSNSTDLPLNIECFMNDKDVSAKMNRSQFEELCAELLQKIEVP
LHLLMEQTHLKTEEVSAIEIVGGATRIPAVKERIARFFGKDVSTTLNADEAVARGCALQCAILSPAFKVREFSVTDAVPF
PISLVWNHDSEETEGVHEVFSRNHAAPFSKVLTFLRRGPFELEAFYSDPQAVPYPEAKIGRFVVQNVSAQKDGEKSKVKV
KVRGNTHGIFTISTASMVEKVPTEEEDGSSVEADMECPNQKPAESSDVDKNIQQDNSEAGTQPQVQTDGQQTSQSPPSPE
LTSEENKIPDADKANEKKVDQPPEAKKPKIKVVNVELPVEANLVWQLGRDLLNMYIETEGKMIMQDKLEKERNDAKNAVE
ECVYEFRDKLCGPYEKFICEQEHEKFLRLLTETEDWLYEEGEDQAKQAYIDKLEELMKMGTPVKVRFQEAEERPRVLEEL
GQRLQHYAKIAADFRGKDEKYNHIDESEMKKVEKSVNEVMEWMNNVMNAQAKRSLHQDPVVRTHEISAKVKELNNVCEPV
VTQPKPKIESPKLERTPNGPNMDKKEDLEGKSNLGADAPHQNGECHPNEKGSVSMDLD*
ACI/N (MCW) Buf/N (MCW) M520/N (MCW) WN/N (MCW) F344/NRrrc (MCW) MR/N (MCW)
WKY/N (MCW)