RGD:113678067 Rat Genome Database

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Variant: RGD:113678067 -  Rattus norvegicus

RGD ID: 113678067
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: Ppargc1a  
Reference Nucleotide: A
Variant Nucleotide: C
Position
Assembly Chr Position
Rnor_6.0 14 63,151,271
JBrowse: View Region in Genome Browser (JBrowse)
Model




Gene Symbol:Ppargc1a
Accession:NM_031347
Location:EXON
Amino Acid Prediction: N to T (nonsynonymous)
Amino Acid Position: 177
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
possibly damaging alignment   NO -1.572 -2.877 +1.305 134   NP_112637   +
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MAWDMCSQDSVWSDIECAALVGEDQPLCPDLPELDLSELDVNDLDTDSFLGGLKWCSDQSEIISNQYNNEPANIFEKIDE
ENEANLLAVLTETLDSLPVDEDGLPSFDALTDGDVTTDNEASPSSMPDGTPPPQEAEEPSLLKKLLLAPANTQLSYNECS
GLSTQNHANHTHRIRTTPAIVKTENSWSNKAKSICQQQKPQRRPCSELLKYLTTNDDPPHTKPTENRNSSRDKCASKKKS
HTQPQSQHAQAKPTTLSLPLTPESPNDPKGSPFENKTIERTLSVELSGTAGLTPPTTPPHKANQDNPFKASPKLKPSCKT
VVPPPTKRARYSECSGTQGSHSTKKGPEQSELYAQLSKSSVLSRGHEERKTKRPSLRLFGDHDYCQSVNSKTDILINISQ
ELQDSRQLDFKDASCDWQGHICSSTDSSQCYLRETLEASKQVSPCSTRKQLQDQEIRAELNKHFGHPSQAVFDDKVDKTS
ELRDGNFSNEQFSKLPVFINSGLAMDGLFDDSEDENDKLSYPWDGTQSYSLFDVSPSCSSFNSPCRDSVSPPKSLFSQRP
QRMRSRSRSFSRHRSCSRSPYSRSRSRSPGSRSSSRSCYYYESSHYRHRTHRNSPLYVRSRSRSPYSRRPRYDSYEANEH
ERLKRDEYRREYEKRESERAKQRERQKQKAIEERRVIYVGKIRPDTTRTELRDRFEVFGEIEECTVNLRDDGDSYGFITY
RYTCDAFAALENGYTLRRSNETDFELYFCGRKQFFKSNYADLDSNSDDFDPASTKSKYDSLDFDSLLKEAQRSLRR*
F344/NCrl (RGD)