rs198107909 Rat Genome Database

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Variant: rs198107909 -  Rattus norvegicus

RGD ID: 112959292
RS ID: rs198107909
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: Acod1  
Reference Nucleotide: G
Variant Nucleotide: A
Position
Assembly Chr Position
Rnor_6.0 15 93,617,968
JBrowse: View Region in Genome Browser (JBrowse)
Model




Gene Symbol:Acod1
Accession:NM_001107282
Location:EXON
Amino Acid Prediction: D to N (nonsynonymous)
Amino Acid Position: 95
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
probably damaging alignment   NO -0.924 -3.079 +2.155 167   NP_001100752   +
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MMLKSVTESFASMIHGLRVGHLTDGVIQRSKRMILDSLGVGFLGTGTEVFHNVTQYSKIYSSNTSSTVWGRPDFRLPPTY
AAFVNGVAIHSMDFNDTWHPATHPSGAVLPVLTALSEALPQTPKFSGLDLLLAFSVGIEVQGRLLHFSKEAKDIPKRFHP
PSVVGTLGSAAATSKFLGLSLTKCREALAIAVSHAGAPIANAATQTKPLHIGNAAKHGMEATFLAMLGLQGNKQILDLGS
GFGAFYANYSPKDLPSLDSHIWLLDQQDVAFKSFPAHLATHWVADAAAAVRKHLVTSERALLPADHIERIVLRIPDVQYV
NRPFPDSEHEARHSFQYVACATLLDGSVTVPSFYSQKVNRPQVKELLKKVELEHPPDNLPSFNTLYCEISITLKDGTTFT
ERSDTFYGHWRKPLSQEDLHKKFRANASKILGEDTVESLITVVEKLEDLEDCAMLTRLLKGPSVQEEASKLSSIFSFHHT
SLPKFTNI*

Gene Symbol:Acod1
Accession:XM_006252440
Location:EXON
Amino Acid Prediction: D to N (nonsynonymous)
Amino Acid Position: 4
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
probably damaging alignment   NO -0.924 -3.079 +2.155 167   XP_006252502   +
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MDFNDTWHPATHPSGAVLPVLTALSEALPQTPKFSGLDLLLAFSVGIEVQGRLLHFSKEAKDIPKRFHPPSVVGTLGSAA
ATSKFLGLSLTKCREALAIAVSHAGAPIANAATQTKPLHIGNAAKHGMEATFLAMLGLQGNKQILDLGSGFGAFYANYSP
KDLPSLDSHIWLLDQQDVAFKSFPAHLATHWVADAAAAVRKHLVTSERALLPADHIERIVLRIPDVQYVNRPFPDSEHEA
RHSFQYVACATLLDGSVTVPSFYSQKVNRPQVKELLKKVELEHPPDNLPSFNTLYCEISITLKDGTTFTERSDTFYGHWR
KPLSQEDLHKKFRANASKILGEDTVESLITVVEKLEDLEDCAMLTRLLKGPSVQEEASKLSSIFSFHHTSLPKFTNI*