RGD:109635796 Rat Genome Database

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Variant: RGD:109635796 -  Rattus norvegicus

RGD ID: 109635796
Genic Status: GENIC
Type: SNV (SO:0001483) 
Associated Genes: Slc12a3  
Reference Nucleotide: T
Variant Nucleotide: C
Position
Assembly Chr Position
Rnor_6.0 19 11,131,865
JBrowse: View Region in Genome Browser (JBrowse)
Model




Gene Symbol:Slc12a3
Accession:NM_019345
Location:EXON
Amino Acid Prediction: N to D (nonsynonymous)
Amino Acid Position: 424
Polyphen Predictions
Prediction Basis Effect Site Score1 Score2 Diff Number Observed Structures Protein ID PDB ID Inverted
probably damaging alignment   NO -1.079 -2.836 +1.757 360   NP_062218   -
Amino Acid Sequence
(Calculated using NCBI transcript definition)
MAELPVTEMPGDALCSGRFTISTLLGGDEPPPAACDNSQPSHLTHGSTLYLRTFGYNTIDVVPAYEHYANSALPGEPRKV
RPTLADLHSFLKQEGSHLHALAFDGRPGHELTDGLVEDETGANSEKSPGEPVRFGWVKGVMIRCMLNIWGVILYLRLPWI
TAQAGIVLTWLIILLSVMVTSITGLSISAISTNGKVKSGGTYFLISRSLGPELGGSIGLIFAFANAVGVAMHTVGFAETV
RDLLQENGTPIVDPINDIRIIGVVTVTVLLAISLAGMEWESKAQVLFFLVIMVSFANYLVGTLIPASKDKASKGFYSYHG
DIFVQNLVPDWRGIDGSFFGMFSIFFPSATGILAGANISGDLKDPAVAIPKGTLMAIFWTTISYLAISATIGSCVVRDAS
GDVNDTVTPGPGLCEGLACGYGWDFTECSQQHSCRYGLINYYQTMSMVSAFAPLITAGIFGATLSSALACLVSAAKVFQC
LCEDQLYPLIGFFGKGYGKNKEPVRGYLLAYAIAVAFIIIAELNTIAPIISNFFLCSYALINFSCFHASITNSPGWRPSF
RYYSKWAALFGAVISVVIMFLLTWWAALIAIGVVLFLLLYVIYKKPEVNWGSSVQAGSYNLALSYSVGLNEVEDHIKNYR
PQCLVLTGPPNFRPALVDFVSTFTQNLSLMICGHVLIAPGKQRVPELRLIASGHTKWLNKRKIKAFYSDVIAEDLRSGVQ
ILMQASGLGRMKPNILVVGFKKNWQSAHPATLEDYIGILHDAFDFNYGVCIMRMREGLNVSEALQTHTAPEALVQEEQTS
TIFQSEQGKKTIDIYWLFDDGGLTLLIPYLLHRKKRWGKCKIRVFVGGQINRMDEERKAIISLLSKFRLGFHEVHVLPDI
NQKPQVEHTKRFEDMIAPFRLNDGFKDEATVAEMRRDYPWKISDEEINKNRIKSLRQVRLNEILLDYSRDAALIILTLPI
GRKGKCPSSLYMAWLETLSQDLSPPVLLIRGNQENVLTFYCQ*
ACI/EurMcwi (RGD)