RGD:155949365 Rat Genome Database

RGD ID:

155949365

ClinVar ID:

CV2267630

Genic Status:

GENIC

Type:

SNV (SO:0001483)

Associated Genes:

Reference Nucleotide:

Variant Nucleotide:

Position

Assembly	Chr	Position
GRCh37	1	54,475,957
GRCh38	1	54,010,284

JBrowse:

Model

ClinVar Data

HGVS Name(s)	Last Evaluated	Molecular Consequence	Clinical Significance	Trait Synonyms
NM_001276395.2:c.*4C>T NM_001276394.2:c.200C>T NM_001276393.2:c.338C>T NM_001276392.2:c.350C>T More...	04/08/2022	3 prime utr variant	uncertain significance	AllHighlyPenetrant

Variant Details

Variant Transcripts

Gene Symbol:	LDLRAD1
Accession:	NM_001010978
Location:	EXON
Amino Acid Prediction:	P to L (nonsynonymous)
Amino Acid Position:	156

Amino Acid Sequence (Calculated using NCBI transcript definition)
MNKVFPQGENGYTAAESKAHPGGEAGGGHLCCSRRGACLSASLLLLLATVAALIALVTILGLPSCTPGAQACITLTNRTG FLCHDQRSCIPASGVCDGVRTCTHGEDEDESLCRDVPQSLPHFLVAHCGDPASWIYSDQKCDGTNNCGDCSDELSLVTVC PPCGPGWWRCPSTFFKYCDCIPRHLCRDHVQHCSDWSDEYACPGP*

Gene Symbol:	LDLRAD1
Accession:	NM_001276392
Location:	EXON
Amino Acid Prediction:	P to L (nonsynonymous)
Amino Acid Position:	117

Amino Acid Sequence (Calculated using NCBI transcript definition)
MQGTRAELSAHSPSRAAGNRRHEQGLPPGAQACITLTNRTGFLCHDQRSCIPASGVCDGVRTCTHGEDEDESLCRDVPQS LPHFLVAHCGDPASWIYSDQKCDGTNNCGDCSDELSLVTVCPPCGPGWWRCPSTFFKYCDCIPRHLCRDHVQHCSDWSDE YACPGP*

Gene Symbol:	LDLRAD1
Accession:	NM_001276394
Location:	EXON
Amino Acid Prediction:	P to L (nonsynonymous)
Amino Acid Position:	67

Amino Acid Sequence (Calculated using NCBI transcript definition)
MNKVFPQGENGYTAAESKAHPGGEGDVPQSLPHFLVAHCGDPASWIYSDQKCDGTNNCGDCSDELSLVTVCPPCGPGWWR CPSTFFKYCDCIPRHLCRDHVQHCSDWSDEYACPGP*

Gene Symbol:	LDLRAD1
Accession:	NM_001276393
Location:	EXON
Amino Acid Prediction:	P to L (nonsynonymous)
Amino Acid Position:	113

Amino Acid Sequence (Calculated using NCBI transcript definition)
MNKVFPQGENGYTAAESKAHPGGEGAQACITLTNRTGFLCHDQRSCIPASGVCDGVRTCTHGEDEDESLCRDVPQSLPHF LVAHCGDPASWIYSDQKCDGTNNCGDCSDELSLVTVCPPCGPGWWRCPSTFFKYCDCIPRHLCRDHVQHCSDWSDEYACP GP*

Gene Symbol:	LDLRAD1
Accession:	XM_011541446
Location:	EXON
Amino Acid Prediction:	P to L (nonsynonymous)
Amino Acid Position:	155

Amino Acid Sequence (Calculated using NCBI transcript definition)
MNKVFPQGENGYTAAESKAHPGGEGGGHLCCSRRGACLSASLLLLLATVAALIALVTILGLPSCTPGAQACITLTNRTGF LCHDQRSCIPASGVCDGVRTCTHGEDEDESLCRDVPQSLPHFLVAHCGDPASWIYSDQKCDGTNNCGDCSDELSLVTVCP PCGPGWWRCPSTFFKYCDCIPRHLCRDHVQHCSDWSDEYACPGP*

Variant Samples

Additional Information

External Database Links

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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